RNA id: TCONS_00029777


Basic Information

Item Value
RNA id TCONS_00029777
length 302
lncRNA type intronic
GC content 0.30
exon number 3
gene id XLOC_014798
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24686710 ~ 24688179 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attgtacctttaaaaaagGTGACCAGAAATTTAAACACGTTTaGGCCTGTATTTCCTGGGTATGAGAAGTTCTTGTTTTAGAGAGataaagaaagaaatgaatgaaaatgaggaATGAAatgagggatggattgatggataggtggatggatagatagaagaaTAAAAGAATGAAACAAACAAAGAAGGGTTggtatgaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaatttattttcacaacactttattacaaaaacattaataCATTATTCAAACAATCAACTCaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030234 lncRNA downstream 293678 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00030233 lncRNA downstream 471364 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00029776 lncRNA downstream 541033 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030232 lncRNA downstream 623483 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00030231 lncRNA downstream 829118 23857112 ~ 23857592 (-) True XLOC_014777
TCONS_00030236 lncRNA upstream 64352 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00030235 lncRNA upstream 64352 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029208 lncRNA upstream 68366 24756545 ~ 24758069 (-) False XLOC_014799
TCONS_00029217 lncRNA upstream 396086 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029216 lncRNA upstream 396086 25084265 ~ 25086092 (-) True XLOC_014806
TCONS_00029203 mRNA downstream 130761 24546556 ~ 24555949 (-) True XLOC_014796
TCONS_00029202 mRNA downstream 130775 24546152 ~ 24555935 (-) False XLOC_014796
TCONS_00029201 mRNA downstream 131087 24545731 ~ 24555623 (-) False XLOC_014796
TCONS_00029200 mRNA downstream 201952 24448584 ~ 24484758 (-) True XLOC_014795
TCONS_00029199 mRNA downstream 242843 24419693 ~ 24443867 (-) False XLOC_014794
TCONS_00029206 mRNA upstream 62287 24750466 ~ 24758109 (-) False XLOC_014799
TCONS_00029207 mRNA upstream 64772 24752951 ~ 24757231 (-) False XLOC_014799
TCONS_00029211 mRNA upstream 249957 24938136 ~ 24958393 (-) True XLOC_014801
TCONS_00029212 mRNA upstream 294493 24982672 ~ 24988640 (-) True XLOC_014802
TCONS_00029213 mRNA upstream 306091 24994270 ~ 25005609 (-) True XLOC_014803
TCONS_00029189 other downstream 497967 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 503819 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029186 other downstream 546816 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029179 other downstream 768576 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029209 other upstream 68664 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029210 other upstream 69014 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029214 other upstream 368633 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029225 other upstream 458607 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 830241 25518420 ~ 25518540 (-) True XLOC_014813

Expression Profile

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