RNA id: TU260856


Basic Information

Item Value
RNA id TU260856
length 605
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G228051
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15543333 ~ 15567945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcggttttatcagaccagataatcttgtttctcatggtttgagtctttaggtggcttttggcaaactccaagtgggctatcatgtgccttttacttccatctggccactttaccataaaggcctgatgggTGGAATGCTGCaaagatggttatccttctggaaggttctcccatctccatagaggaactggagctctgtcagagtgaccattgggttctttgtcacctccctgaccaaggcccttctcccccgatttaagaatgatggaggccactgtgttctttgaccttcaatgctgcagaaatttttcgtacccttccccagacatgttccttgacacaatcctgtttcagagctctacggacaattccatcaacctcacggcttggtttttgctctgacatgcactgtcaactgtgagaccttatattgacaagtgtgtgcctttccaaatcatgtcaaatcaattgaatttaccacagctgtactccaaacaagttgtagaaacatctctaggatgatcaatggaaacaggaggcacctgagctcaatttaagtctcatagcaaagggtatgaatcattatgtaaattaggtatttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU260852 lncRNA downstream 3115 15540013 ~ 15540218 (-) True G228047
TU260842 lncRNA downstream 5018 15536365 ~ 15538315 (-) False LOC110512327
TU260843 lncRNA downstream 5018 15536365 ~ 15538315 (-) False LOC110512327
TU260674 lncRNA downstream 69449 15473639 ~ 15473884 (-) True G227880
TU260564 lncRNA downstream 149995 15393062 ~ 15393338 (-) True G227803
TU260983 lncRNA upstream 146376 15714321 ~ 15714521 (-) True G228148
TU260985 lncRNA upstream 150877 15718822 ~ 15719083 (-) True G228150
TU260990 lncRNA upstream 156094 15724039 ~ 15724275 (-) True G228155
TU260993 lncRNA upstream 159154 15727099 ~ 15727343 (-) True G228158
TU260994 lncRNA upstream 159966 15727911 ~ 15728129 (-) True G228159
XM_021592782.2 mRNA downstream 3656 15536363 ~ 15539677 (-) False LOC110512327
XM_036970298.1 mRNA downstream 3673 15536363 ~ 15539660 (-) False LOC110512327
XR_005041212.1 mRNA downstream 3675 15536363 ~ 15539658 (-) False LOC110512327
XM_021592768.2 mRNA upstream 60492 15628437 ~ 15631725 (-) True upk1a
XR_005041232.1 mRNA upstream 116027 15683972 ~ 15685054 (-) True LOC118946067
XM_036970409.1 mRNA upstream 233414 15801359 ~ 15817153 (-) True LOC110503794
XM_036964264.1 mRNA upstream 256133 15824078 ~ 15830026 (-) True LOC110503786
XM_021592693.2 mRNA upstream 285286 15853231 ~ 15861569 (-) True LOC110512120
TU260846 other downstream 5018 15536365 ~ 15538315 (-) True LOC110512327
TU259832 other downstream 906623 14598789 ~ 14636710 (-) False LOC110503689
TU259714 other downstream 1018479 14523180 ~ 14524854 (-) False psenen
TU259715 other downstream 1018479 14523256 ~ 14524854 (-) True psenen
TU259726 other downstream 1068167 14428793 ~ 14475166 (-) True G227060
TU260901 other upstream 33070 15601015 ~ 15601488 (-) True G228094
TU260907 other upstream 138289 15706234 ~ 15708265 (-) True G228098
TU261050 other upstream 219677 15787622 ~ 15791165 (-) False G228191
TU262386 other upstream 1271444 16839389 ~ 16839839 (-) True G229373
TU262393 other upstream 1282027 16849972 ~ 16850199 (-) True G229380

Expression Profile