RNA id: TCONS_00030235


Basic Information

Item Value
RNA id TCONS_00030235
length 1748
lncRNA type sense_over
GC content 0.41
exon number 7
gene id XLOC_014799
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24750466 ~ 24758109 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTGGTAGCAGGAGTTGTGGCGTTGAGTCTGTATTTAAAGCATACAATTTCCCTGAATTCTGTGATGGACATTCATTCCTAAGGATTGGTCACAAGATGGCGATTCTCAGCTGCTGCAGGAATGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTGTTTTAGGATGGACATGACGGGAATGGTTATTGAAGTGAATGGGCTCCCGGACAGCTACCGAGAAGATGCAATGATTGACAAATTAACTATCCATTTTCTGAGGCGCTGTAACAAAGGAGAAGATGTTTTAACAGTGATTTATCCCACTTCCAACAAGGGCCAGGCTTATGTAGTCTTTGAATCAGAAGAGGTTCCTGGAGTCTTGGAACACACTCATGTTTTGCAAGTGGAGAGTCAGTTTTACCCACTGGTTGTTAAGCAGGTGGACCTGCCTCTGCTGGACATGCCAGCCGAAACATTTCTCAATATGAACCTGTTCTCCAGCCACAAGAAGATTGTAGAACTTCTTGATAACCATGGCTTTCAGGTGACACCGACCAGATCAGGGCAGATGCAATTGCAGGGTTCCTTTCTCAAGCTTCAACTTGTTTATCCAAAGCTGATGCAGATTCTTGCTGAAGAAACTCACTCTCAAAGGACACCTTCTCACTACACTAATGGCTACTCAGACTCTGCCTCCAGAGCTGGCTCAAGTGACTATGAATATAAATCCAGATCCAATGTCACATCAAGATACAGACCCAATAATGGCAGCTCAGTGTATGTTATGTCTAGAAGCACATCTTCAGGAGTAAAGTCAGAATCTCCAAACAAGATGGCATTTTTGCAGACTTCCTCAGTACACAATGGAAGCTCCAGGATAGATAGTTCCTTTAACAGTCCCTCCAGGAACTATGAAGATACACCCACAAGCATCCATCGCTTGTCTCCCAGGAAAACTGAGGATTCCTTCCATGCAGATCCAGATGTGATGGAATACATAATGCATTTCAATGAAGATTCTGTTGAAAAAATACAGTCAGATTATCGCACTCATATTAGTTACGTTTCAGTGGTTGATTCAGAGGTTGTTATGGTTAAACTCTCTAGAGGAGATTGTGAGGAAGCAGCAAAAGAATTGCGTGAATTGATAGAAAACTTCAGGTCTTCTCTATGCACACAAGAAATAGATCTGAATGAACTTGATGACAGTCATACAAACGAGATTTTTCGGAAAGCAAATTCATTTCAAAAGATCTACAAAGTTTTAATTAGGCATAAAGGTAGCATTATTAAAGTGGTAGGGTCATCGCAAAACAGTTATGAAGCAAAGCAAAGGCTTCTTGGAGAAAAGGTTGAATTTGCACCAGCAAAACTCATGGAGAGGAAAAAACACAAGGCAGAGAATGGAGAATCTTGAACTTGAACGTCCTGTTGCTCTGAACACTACTTCTGCGAGTAGCTCTTCTGCCTCACGTTTTCAAAAGGACTCTGAATTGCAGCTAGAAGTACCACAGGAAAGAGGTAGAACACCTAAATCTATGACACAACGTGTACGCTCACAGAGCGCCACTCGATCAAAACACAAATCTCAGGGTAATCAAGTAAACCGGGAACTGTCAAATTATGATCAGCAGAATTCAAAACCATCTAATGAAGCCCAGAAATCTAACCCAATACCAAAAATCTTAGCTGCTCTTCGACctgaaacaaatacaaaaattcaTCAAAAATTTTTCAAAGTGACTAAATCTAATAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029777 lncRNA downstream 64352 24686710 ~ 24688179 (-) True XLOC_014798
TCONS_00030234 lncRNA downstream 359499 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00030233 lncRNA downstream 537185 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00029776 lncRNA downstream 606854 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030232 lncRNA downstream 689304 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00029217 lncRNA upstream 326198 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029216 lncRNA upstream 326198 25084265 ~ 25086092 (-) True XLOC_014806
TCONS_00029224 lncRNA upstream 354729 25112796 ~ 25114667 (-) False XLOC_014807
TCONS_00029226 lncRNA upstream 397475 25155542 ~ 25157191 (-) True XLOC_014808
TCONS_00029239 lncRNA upstream 1972231 26730298 ~ 26736346 (-) False XLOC_014818
TCONS_00029205 mRNA downstream 6637 24640467 ~ 24745894 (-) True XLOC_014797
TCONS_00029204 mRNA downstream 7214 24640467 ~ 24745317 (-) False XLOC_014797
TCONS_00029203 mRNA downstream 196582 24546556 ~ 24555949 (-) True XLOC_014796
TCONS_00029202 mRNA downstream 196596 24546152 ~ 24555935 (-) False XLOC_014796
TCONS_00029201 mRNA downstream 196908 24545731 ~ 24555623 (-) False XLOC_014796
TCONS_00029211 mRNA upstream 180069 24938136 ~ 24958393 (-) True XLOC_014801
TCONS_00029212 mRNA upstream 224605 24982672 ~ 24988640 (-) True XLOC_014802
TCONS_00029213 mRNA upstream 236203 24994270 ~ 25005609 (-) True XLOC_014803
TCONS_00029215 mRNA upstream 313986 25072053 ~ 25081711 (-) True XLOC_014805
TCONS_00029218 mRNA upstream 330083 25088150 ~ 25149077 (-) False XLOC_014807
TCONS_00029189 other downstream 563788 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 569640 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029186 other downstream 612637 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029179 other downstream 834397 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029214 other upstream 298745 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029225 other upstream 388719 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 760353 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029249 other upstream 2070114 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029261 other upstream 2414647 27172714 ~ 27172830 (-) True XLOC_014831

Expression Profile

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