RNA id: TCONS_00029207



Basic Information


Item Value
RNA id TCONS_00029207
length 1432
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_014799
representative False

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 24750466 ~ 24758109 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTACTAAATACAGCGTGGTTATAGAAACTCCAGATAAACATTCCTTCAGGAATGTGATTTAATGTCTCACCTTTGCTTGTAAAGTTATTCACTGAAGTTGTCTTTCTCTTACAGCATACAATTTCCCTGAATTCTGTGATGGACATTCATTCCTAAGGATTGGTCACAAGATGGCGATTCTCAGCTGCTGCAGGAATGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTGTTTTAGGATGGACATGACGGGAATGGTTATTGAAGTGAATGGGCTCCCGGACAGCTACCGAGAAGATGCAATGATTGACAAATTAACTATCCATTTTCTGAGGCGCTGTAACAAAGGAGAAGATGTTTTAACAGTGATTTATCCCACTTCCAACAAGGGCCAGGCTTATGTAGTCTTTGAATCAGAAGAGGTTCCTGGAGTCTTGGAACACACTCATGTTTTGCAAGTGGAGAGTCAGTTTTACCCACTGGTTGTTAAGCAGGTGGACCTGCCTCTGCTGGACATGCCAGCCGAAACATTTCTCAATATGAACCTGTTCTCCAGCCACAAGAAGATTGTAGAACTTCTTGATAACCATGGCTTTCAGGTGACACCGACCAGATCAGGGCAGATGCAATTGCAGGGTTCCTTTCTCAAGCTTCAACTTGTTTATCCAAAGCTGATGCAGATTCTTGCTGAAGAAACTCACTCTCAAAGGACACCTTCTCACTACACTAATGGCTACTCAGACTCTGCCTCCAGAGCTGGCTCAAGTGACTATGAATATAAATCCAGATCCAATGTCACATCAAGATACAGACCCAATAATGGCAGCTCAGTGTATGTTATGTCTAGAAGCACATCTTCAGGAGTAAAGTCAGAATCTCCAAACAAGATGGCATTTTTGCAGACTTCCTCAGTACACAATGGAAGCTCCAGGATAGATAGTTCCTTTAACAGTCCCTCCAGGAACTATGAAGATACACCCACAAGCATCCATCGCTTGTCTCCCAGGAAAACTGAGGATTCCTTCCATGCAGATCCAGATGTGATGGAATACATAATGCATTTCAATGAAGATTCTGTTGAAAAAATACAGTCAGATTATCGCACTCATATTAGTTACGTTTCAGTGGTTGATTCAGAGGTTGTTATGGTTAAACTCTCTAGAGGAGATTGTGAGGAAGCAGCAAAAGAATTGCGTGAATTGATAGAAAACTTCAGGTCTTCTCTATGCACACAAGAAATAGATCTGAATGAACTTGATGACAGTCATACAAACGAGATTTTTCGGAAAGCAAATTCATTTCAAAAGATCTACAAAGTTTTAATTAGGCATAAAGGTAGCATTATTAAAGTGGTAGGGTCATCGCAAAACAGTTATGAAGCAAAGCAAAGGCTTCTTGGAGAAAAGGTTGAATTTGCACCAGCAAAA

Function


GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-52 Orthologous to human RBM43 (RNA binding motif protein 43).

Ensembl:

ensembl_id ENSDART00000128177

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00029777 lncRNA downstream 64772 24686710 ~ 24688179 (-) True XLOC_014798
TCONS_00030234 lncRNA downstream 359919 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00030233 lncRNA downstream 537605 24214273 ~ 24215346 (-) True XLOC_014790
TCONS_00029776 lncRNA downstream 607274 24141315 ~ 24145677 (-) True XLOC_014785
TCONS_00030232 lncRNA downstream 689724 23994034 ~ 24063227 (-) True XLOC_014781
TCONS_00029217 lncRNA upstream 327034 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029216 lncRNA upstream 327034 25084265 ~ 25086092 (-) True XLOC_014806
TCONS_00029224 lncRNA upstream 355565 25112796 ~ 25114667 (-) False XLOC_014807
TCONS_00029226 lncRNA upstream 398311 25155542 ~ 25157191 (-) True XLOC_014808
TCONS_00029239 lncRNA upstream 1973067 26730298 ~ 26736346 (-) False XLOC_014818
TCONS_00029205 mRNA downstream 7057 24640467 ~ 24745894 (-) True XLOC_014797
TCONS_00029204 mRNA downstream 7634 24640467 ~ 24745317 (-) False XLOC_014797
TCONS_00029203 mRNA downstream 197002 24546556 ~ 24555949 (-) True XLOC_014796
TCONS_00029202 mRNA downstream 197016 24546152 ~ 24555935 (-) False XLOC_014796
TCONS_00029201 mRNA downstream 197328 24545731 ~ 24555623 (-) False XLOC_014796
TCONS_00029211 mRNA upstream 180905 24938136 ~ 24958393 (-) True XLOC_014801
TCONS_00029212 mRNA upstream 225441 24982672 ~ 24988640 (-) True XLOC_014802
TCONS_00029213 mRNA upstream 237039 24994270 ~ 25005609 (-) True XLOC_014803
TCONS_00029215 mRNA upstream 314822 25072053 ~ 25081711 (-) True XLOC_014805
TCONS_00029218 mRNA upstream 330919 25088150 ~ 25149077 (-) False XLOC_014807
TCONS_00029189 other downstream 564208 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 570060 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029186 other downstream 613057 24139780 ~ 24139894 (-) True XLOC_014784
TCONS_00029179 other downstream 834817 23897702 ~ 23918134 (-) False XLOC_014780
TCONS_00029214 other upstream 299581 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029225 other upstream 389555 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 761189 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029249 other upstream 2070950 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029261 other upstream 2415483 27172714 ~ 27172830 (-) True XLOC_014831

Expression Profile


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