RNA id: TU261033


Basic Information

Item Value
RNA id TU261033
length 2932
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G228191
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15762029 ~ 15791401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCAAATCTCAGATTTATTATGCCATGTCAGTGATCACTTAGCTTGCCACATCAACAGTTTGTCTTTGTGGTAGGCCTGCTACTGTATGCACATTGCTCAGATGAGGGTCTGTCGACTGAAAGCTGAAAAAAGCAGAAAGCTGTGATTTGCATTTGACCTTTGTGTGCAAAAGTATACTCTTTATTCTTATATATCCAACTTTATTCTTACCCAGTTTCCCCCATTCAGGCCCCGCCCAGTGGCTGACTTAAACTAAGTCAGTGTTTTAATACCACCTTTAACTGTTACATTTAGTCAATGCCCAACTTTCACCAGCAGGAAGAAGGCAACCAAACaaaaaacagaagaaaacaggttCATTTTTACCTTTTCTTTTTCTTGTTAAATAGTAATAAATACATGAGATGCAGTGGtttatttttccatttttttCTGAAGCAGGAGGGTTaaaaagtttatttttatttatttatctgtctgtttgttttcTTTAGCAGCAATCCGAACATGGTTGAAAGTGGAGATAGCAGCCGAGAGAGAAGTAGTTCACTTTTTTTTAACTTGATGGCAAACAGCACTCACAGAGTGtcgtgaaggagggagggaaggggagaacaAAAGACAGGAGTAAGAAAAGAGGCCAGAGAAGTCAGAGTCACTGGGGTTGTAGGGGTAAGGAGGGCATGAAAGTGTCCCCTCATATGTATGTACTCCTCCCTCCTGCTATATATTGCCCCCCTCCCTTCCAACAGAAAAATggggcagagaggagaagagagcgagagatcgagacagagagagtgagcaagATTTGGCTTAGCATATCCAGAGTTACTCCAACCCAAAATGTGTGTTACGTTTCTGTAGTTTACGGTCCAAAACAAAAGTGAgtaagaaaagagagagagaaagagggtgaaagATTCTGGTTAGATGTTGAAGTAGAAGGcagactattttttttttttttaaacaacagggAAGCATTTTGGTTTTCCTTGTGGCAAaatcttttgttgtttttttgttcttcTTGAATCACTTCCTCCTTTTGTGAAGAAGTtctgttccccctctcctcttgaaAGCGTCTCACTTCGTCAAATGTTTCAGCCTCCTCATCGTATAGTTTCTCACTGTGTGGTGACTATGGTTTTTGTCATTTGCTTCATTTTATTTCTATGATCTGTTTCATAGTTTCAGATATATAAGCCAGTGTCAAgcgagagaagaaaaaaaatgtaacaaaagtgtgtgtgtgtttcggggGTGAGATATACTGAACTGAAAAACAAACTAAAAAGACCCTagtttgtttgtttctctgtgtatgCGCAAGTGTTTTCTGTCCATCAGCAAATAAAActaaacctgtataaataaaaataaaaatgaataaataaaccaCCTCTCAATTTAGCGCTCTTCCGATCTCCCCACTTACCCTCCTCCCCATGTAGTGATgtttaataaataaaacatgtacaaTTAAACCTAGACTTCAGAAAATCtaaacaaaaacaaagaaaaaaaatagGAATTTAAAAATAGCATAAGGGTACCCAGCATAAGGGTACTCTCTCGTGCCTCCCTCTTCTTAACCAACAATTACCACTTTTCAAACCATTCATTTACCTTTGCGGTCTTCATTCCAAAAAACAAcccaaacaacaaaaatctcGCTGCAAACCTTTCCTTAAATCACATAAAatcaaataatataataataataacaataaaaacaaACTTATCTGAAACTTTCCATTCCAACTACTGAGCCCCGTTTCTTTCCttcaacaaaataaaaacaaagaaACTGAAAAAAGGATAAAAATGGTTTCAAAGCCTtccctctcttactctccctctcttactctccctcccttactctccctcccttactctccctctcttactctccctctcttactctccctctcttactctccctctcccactctccctctcttactctcccactctccctcgaCCTTCTCCcatgcaaaacaaaacaaaactccTGTGATATTTCACAAGTTTGTCTCTGTAACTGTATGTGTGGCCGTATTTGTTCCAAACTCAAGAGTGTAtactgtgtatgtatgcatgttgAAATTGTAATGTTGTCGTTGTTAAAATTGTATGGCTTTTGGAATTTGTTCAAGATTTATCAAGAGTTGGCCGTGTTCTGACCACCGCCTCCTCCACTGCCGCACACACCCATCATGGTGGACTCCTCAGAGTCCGGCCTCCCCCCACCGCCCCCTACTCCCCTGGGTGGGGGCCCCCCGGTGAGCATCCCGCCCCCGACCACGCTACCCTGGGGagggttgttattgttgttacttcCCGGGTAGCATGGGGGGATGTATCCAAGCCCGGAGGCAGCGACCAAGCTGTCCTGAGAGGCTGGGGGCTGAGCCAACTGTTGCTGGGAGCCGGCGGGGGGCGGCTGGGGGGCCATGACCGTCCTAGTCCGAAAGGCAGAGAGGCCCAGGTGGAGGTTGGAGGAGCCGTACTGGCTGGAGTCCAAGCTGGATGGGGGCGGCATGATGGAAGACTGACCcagatggtggtggtgtgtgagGCTGAGCTCGATGCTGTCCGGCATCTGTGGGGAGGAGATGGGCATCAGGGGCTGGCCCTGCTGGCCCTGTGAAGCCTGGCCCTGGGGCTGGTTCCCCTGCCCAGTCTGCCGCAGGCCCCGCCCATTGCCGTGGTGACCGCCGTAGATGGGGTGCGGGTGGTGGGGTTCCATCATGCCCCCGACGCCGCCGCCTCCCAGGAAGTGGCGTGAGTGCTGGGTGGCCGCCGGCTTGTGCAGCAGCAGCTGGGGGTATGGGGGGTCGCCAACGCTACTGCCGCTGTTGGACAGGGGACCCATGCCCCCCTCTCCACCCGGCCAGAGGCGCAGCTGCTGCTGAGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU261024 lncRNA downstream 26776 15760569 ~ 15760846 (-) True G228189
TU261015 lncRNA downstream 36310 15751109 ~ 15751312 (-) True G228180
TU261012 lncRNA downstream 39654 15747720 ~ 15747968 (-) True G228177
TU261008 lncRNA downstream 42863 15744486 ~ 15744759 (-) True G228173
TU261004 lncRNA downstream 48794 15738398 ~ 15738828 (-) True G228169
TU261069 lncRNA upstream 4528 15795513 ~ 15795751 (-) True G228207
TU261759 lncRNA upstream 61461 15852446 ~ 15853201 (-) False G228822
TU261760 lncRNA upstream 61461 15852446 ~ 15853201 (-) True G228822
TU261761 lncRNA upstream 67376 15858361 ~ 15858792 (-) True G228823
TU261822 lncRNA upstream 144334 15935319 ~ 15935521 (-) True LOC118944492
XR_005041232.1 mRNA downstream 102568 15683972 ~ 15685054 (-) True LOC118946067
XM_021592768.2 mRNA downstream 155897 15628437 ~ 15631725 (-) True upk1a
XM_021592782.2 mRNA downstream 247945 15536363 ~ 15539677 (-) False LOC110512327
XM_036970298.1 mRNA downstream 247962 15536363 ~ 15539660 (-) False LOC110512327
XR_005041217.1 mRNA downstream 247964 15536363 ~ 15539658 (-) False LOC110512327
XM_036970409.1 mRNA upstream 10374 15801359 ~ 15817153 (-) True LOC110503794
XM_036964264.1 mRNA upstream 33093 15824078 ~ 15830026 (-) True LOC110503786
XM_021592693.2 mRNA upstream 62246 15853231 ~ 15861569 (-) True LOC110512120
XM_036970514.1 mRNA upstream 109913 15900898 ~ 15912729 (-) True LOC110503781
XR_005039833.1 mRNA upstream 141833 15932818 ~ 15935444 (-) False LOC118944492
TU260907 other downstream 79357 15706234 ~ 15708265 (-) True G228098
TU260901 other downstream 186134 15601015 ~ 15601488 (-) True G228094
TU260846 other downstream 249307 15536365 ~ 15538315 (-) True LOC110512327
TU259832 other downstream 1150912 14598789 ~ 14636710 (-) False LOC110503689
TU259715 other downstream 1262768 14523256 ~ 14524854 (-) True psenen
TU262386 other upstream 1048404 16839389 ~ 16839839 (-) True G229373
TU262393 other upstream 1058987 16849972 ~ 16850199 (-) True G229380
TU262748 other upstream 1254040 17045025 ~ 17048344 (-) True G229707
TU263791 other upstream 2184260 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 2302771 18093756 ~ 18131054 (-) False LOC110503747

Expression Profile