RNA id: TU261085



Basic Information


Item Value
RNA id TU261085
length 405
lncRNA type intronic
GC content 0.41
exon number 1
gene id G228223
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15825304 ~ 15825708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATGCTTCAGGATATTTCTCAAGGTAATATGACCTCTGGTACCAGAGTTGAGCACATAGTATACATTGTATTTAATCTTTCAAAGAATTGTACAGTTGTATAAATAAACCTAGGTGGAGACTTAGAGTAATGTTCAGAGTCCATTGTTCTTGTATCATGCGTCAAAGTTTTCATCATCAGTGCATGTATTAGTGGACAGATTACCCAGGTATTCCTCAGTAAGGGTTGCCCTGTAGTTACATCGGTACAATAATTCCATGTGATGATGTAGAGGTATAGATCCTGGAAATGCTAGCATGCTATCTGGAAGTTTTGCAATAGATGGACCTCTCTTTACATTGTCCTTTAACAATACTGATTTTGTCACTGAACAGATTGACCAGATTTGAGTAGTAAATAATATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU260833 lncRNA upstream 8164 15815287 ~ 15817140 (+) True G228034
TU260831 lncRNA upstream 23449 15801361 ~ 15801855 (+) True G228032
TU260810 lncRNA upstream 84623 15740220 ~ 15740681 (+) True G228011
TU260706 lncRNA upstream 113185 15711587 ~ 15712119 (+) True LOC110503805
TU260770 lncRNA upstream 122356 15652598 ~ 15702948 (+) True G227971
TU261287 lncRNA downstream 340315 16166023 ~ 16166365 (+) True G228414
TU261329 lncRNA downstream 401198 16226906 ~ 16229345 (+) True G228451
TU261600 lncRNA downstream 865836 16691544 ~ 16693504 (+) True G228707
TU261607 lncRNA downstream 876944 16702652 ~ 16702864 (+) True G228711
TU261611 lncRNA downstream 881451 16707159 ~ 16734495 (+) True G228715
XM_036970414.1 mRNA upstream 24118 15798945 ~ 15801186 (+) True LOC110512192
XM_021592725.2 mRNA upstream 29781 15791844 ~ 15795523 (+) True zp3d.1
XM_036970380.1 mRNA upstream 36649 15761819 ~ 15788655 (+) False LOC110503805
XM_021592719.2 mRNA downstream 5125 15830833 ~ 15844953 (+) False LOC110512168
XM_021592714.2 mRNA downstream 5127 15830835 ~ 15844953 (+) True LOC110512168
XM_036970452.1 mRNA downstream 20512 15846220 ~ 15852719 (+) False LOC110512131
XM_036970456.1 mRNA downstream 20530 15846238 ~ 15852719 (+) False LOC110512131
XM_021592702.2 mRNA downstream 20533 15846241 ~ 15853237 (+) False LOC110512131
TU260768 other upstream 128660 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 581022 15243946 ~ 15244282 (+) True G227606
TU260267 other upstream 729391 15073144 ~ 15095913 (+) True LOC110511049
TU260122 other upstream 827229 14997159 ~ 14998075 (+) False G227405
TU261485 other downstream 687795 16513503 ~ 16515893 (+) True LOC118944532
TU261556 other downstream 817643 16643351 ~ 16647584 (+) True LOC110503770
TU261452 other downstream 968991 16794699 ~ 16798932 (+) True LOC100653482
TU264064 other downstream 2469646 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 2744301 18570009 ~ 18586841 (+) True LOC110511593

Expression Profile