RNA id: TU262465


Basic Information

Item Value
RNA id TU262465
length 391
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G229448
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 16904589 ~ 16904979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTCTGGCAGTCTTTCCTAGTCTaactgcctctctcgctctctgaatttaattcaattcaagggcttgattggcatgggaaacatgttaacattgccaaagccagTGAAGTAgatacagtgccatgcgaaagtattcagcccccttgaactttgcaaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaactttttcaacaaatcaaaaactgaaaaattgggcgtgcaaaatgattcagcccccttaagttaatactttgtagcgtcaccttttgctgcgattacagctgtaagtcgcttgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262448 lncRNA upstream 6043 16897826 ~ 16898546 (+) True G229433
TU262445 lncRNA upstream 6954 16895783 ~ 16897635 (+) False G229431
TU262444 lncRNA upstream 7622 16893308 ~ 16896967 (+) True G229430
TU262446 lncRNA upstream 8244 16895783 ~ 16896345 (+) True G229431
TU262441 lncRNA upstream 14331 16890021 ~ 16890258 (+) True G229428
TU262466 lncRNA downstream 368 16905347 ~ 16905589 (+) True G229449
TU262488 lncRNA downstream 22417 16927396 ~ 16928025 (+) True G229471
TU262507 lncRNA downstream 38533 16943512 ~ 16943757 (+) True G229490
TU262539 lncRNA downstream 73237 16978216 ~ 16983150 (+) True G229520
TU262565 lncRNA downstream 112287 17017266 ~ 17017562 (+) True G229543
NM_001246353.1 mRNA upstream 102796 16794928 ~ 16801793 (+) False LOC100653482
XM_021592635.2 mRNA upstream 117362 16760501 ~ 16787227 (+) False LOC110511998
XM_036970563.1 mRNA upstream 117362 16760501 ~ 16787227 (+) False LOC110511998
XM_021592640.2 mRNA upstream 203755 16678893 ~ 16700834 (+) False sim1a
XM_036970577.1 mRNA downstream 317603 17222582 ~ 17341150 (+) False LOC110503758
XR_002470690.2 mRNA downstream 451795 17356774 ~ 17359570 (+) True LOC110505127
XM_021592620.2 mRNA downstream 557984 17462963 ~ 17476591 (+) True LOC110511964
XM_036970578.1 mRNA downstream 579229 17484208 ~ 17717455 (+) False LOC110503753
XM_036970579.1 mRNA downstream 626124 17531103 ~ 17717455 (+) True LOC110503753
TU261452 other upstream 105657 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 257005 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 388696 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 1207945 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 1660307 15243946 ~ 15244282 (+) True G227606
TU264064 other downstream 1390375 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 1665030 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 1946270 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 2321387 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 2922151 19827130 ~ 19844652 (+) True LOC110512505

Expression Profile