RNA id: TCONS_00029217


Basic Information

Item Value
RNA id TCONS_00029217
length 1475
lncRNA type lincRNA
GC content 0.39
exon number 3
gene id XLOC_014806
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25084265 ~ 25086092 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGAGTTTGAACCAATCATTTTTCAGTTAGTGTACATCTGTATTCAACTGATGTTGTGTGTACTTCAGAGACATACAGTAACTTCAGGACTGAAGGGTTTTATATCCACCATTTGTAGGATCTGAGAAGAGTCAGAGATCAGTCTGATGGAGCATAAAATAAAGACGGATGTCTGGTACAATTATTAATTTGACATATTTTTGTTAACTTTGTGTGTTAAGTGTTCCTCAAGGCCCAGCAAATCTTGAGGAACAGGAGAAGTGCATCAGTTTCACAGAGTATCTCCTGGACAACCTCAAACATCTACTTCCAAACATGTACCCTCACGCATCTGTCAGCAACACAACAGTGAGTTTAGActtatgtttatatttgtatttgtgtttataaTGTTGTGAATCTGATGAAATGatgataaataattattttttttggtttggttCATGAGTGAGAGATTCAgaaatgtgtttgtgtatatgatGAGGCAGACAGTGTGTTTGAGGAGAGAGGAGACATCACCATTGAAGAGTGTGTCCAGCTGCTGCCTCTCACAGAGAACAGGTCCAAGCCACCAAAAGTTGGACAACTTGGGCGTCTCAAAAAAAGATTAACACATTTTTGGAGAAAGTTCGGCTCATGCACTGGCAGCCCCTATAAAGAGAGTAAAGAGCCTTCTGGAGCCGGTGATGGACAAAAGCAACCAATGAGGGTCACCGGAAAACGTTGAGGGCCGGTGAGGGTCACTGAAGGACTGTGAGGGGTTGGTGACATTCACCTGAGTGCACAAATGGTTTGGTGAGGGTCACCAGAGAATAATGTGACTGGTAAGGGTCACCTGAAAACACAGAGTTGGTGAGGGTCACCAGAGGACATAGGACTGGTGAGGGTCATCTCAAGGCATGGAGAGTTAATGAGGGTCACCAGAGGACAATACGACAGGAGAGGGACACCTGAAAACACTGAGGGTTGGTGAGGGTCACCTGAAGACACAGAGGGTTGGTGAGGGTCACTCAATTAAAGCttgtcattttcatttaattactgTCTCTCTTGTTTTTTGTGTCTGTATTCTGCAGTCTTTAGTGTGTAATAGTAGCATTTTCTGCACTCAGATGTTTACAAAtctaaaaacatttacaataaaataaacatggtattacaaaacaataaaattaaaaatgtatgacattacataattttgtttatttattatatataataaaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaacgaacgaacgaacgaacgaatgaatgaatgaattaaacttAAAATCATGTTACTCTAAACTTAAATAGCAAGTGAATTACACAAGGAGCTGTCTTTATTGTAAGTCAAAGAGAACGTAACCCAGTGTACTCTTGAACATGTCATGAGGTTCTTACTTTCAGACGAATATTAGATGTTGCTGAGTGAATTTACTTTGAGGGACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194522

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029208 lncRNA downstream 326196 24756545 ~ 24758069 (-) False XLOC_014799
TCONS_00030236 lncRNA downstream 326198 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00030235 lncRNA downstream 326198 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029777 lncRNA downstream 396086 24686710 ~ 24688179 (-) True XLOC_014798
TCONS_00030234 lncRNA downstream 691233 24388065 ~ 24393032 (-) True XLOC_014793
TCONS_00029224 lncRNA upstream 26704 25112796 ~ 25114667 (-) False XLOC_014807
TCONS_00029226 lncRNA upstream 69450 25155542 ~ 25157191 (-) True XLOC_014808
TCONS_00029239 lncRNA upstream 1644206 26730298 ~ 26736346 (-) False XLOC_014818
TCONS_00029241 lncRNA upstream 1646030 26732122 ~ 26736343 (-) True XLOC_014818
TCONS_00029778 lncRNA upstream 1693454 26779546 ~ 26780698 (-) True XLOC_014820
TCONS_00029215 mRNA downstream 2554 25072053 ~ 25081711 (-) True XLOC_014805
TCONS_00029213 mRNA downstream 78656 24994270 ~ 25005609 (-) True XLOC_014803
TCONS_00029212 mRNA downstream 95625 24982672 ~ 24988640 (-) True XLOC_014802
TCONS_00029211 mRNA downstream 125872 24938136 ~ 24958393 (-) True XLOC_014801
TCONS_00029206 mRNA downstream 326156 24750466 ~ 24758109 (-) False XLOC_014799
TCONS_00029218 mRNA upstream 2058 25088150 ~ 25149077 (-) False XLOC_014807
TCONS_00029219 mRNA upstream 2058 25088150 ~ 25149598 (-) False XLOC_014807
TCONS_00029220 mRNA upstream 3147 25089239 ~ 25113660 (-) False XLOC_014807
TCONS_00029221 mRNA upstream 8710 25094802 ~ 25114701 (-) False XLOC_014807
TCONS_00029222 mRNA upstream 24237 25110329 ~ 25149034 (-) False XLOC_014807
TCONS_00029214 other downstream 23388 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029210 other downstream 326941 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029209 other downstream 327291 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029189 other downstream 895522 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 901374 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029225 other upstream 60694 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 432328 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029249 other upstream 1742089 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029261 other upstream 2086622 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029268 other upstream 2248438 27334530 ~ 27336629 (-) False XLOC_014832

Expression Profile

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