RNA id: TU263353


Basic Information

Item Value
RNA id TU263353
length 1428
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G230288
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17782933 ~ 17785805 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgacttttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgatttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgattatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactacacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactatacatgttgatgagaactagaaccctcacagtactgtacagtatgagtgttatactagacatgttgttttcttttttattattattgcaGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263309 lncRNA upstream 74037 17708218 ~ 17708896 (+) True G230246
TU263197 lncRNA upstream 264005 17518626 ~ 17518928 (+) True G230138
TU263157 lncRNA upstream 303772 17478887 ~ 17479161 (+) True G230105
TU262919 lncRNA upstream 421362 17361350 ~ 17361571 (+) True G229874
TU262914 lncRNA upstream 431559 17351161 ~ 17351374 (+) True G229870
TU263449 lncRNA downstream 128570 17914375 ~ 17915901 (+) True G230378
TU263452 lncRNA downstream 131126 17916931 ~ 17917402 (+) True G230381
TU263379 lncRNA downstream 148451 17934256 ~ 17938416 (+) True LOC110511937
TU263380 lncRNA downstream 154729 17940534 ~ 17942259 (+) True G230312
TU263475 lncRNA downstream 178167 17963972 ~ 17964378 (+) True G230401
XM_021592617.2 mRNA upstream 59336 17719737 ~ 17723597 (+) True LOC110511951
XM_036970578.1 mRNA upstream 65478 17484208 ~ 17717455 (+) False LOC110503753
XM_036970579.1 mRNA upstream 65478 17531103 ~ 17717455 (+) True LOC110503753
XM_021592620.2 mRNA upstream 306342 17462963 ~ 17476591 (+) True LOC110511964
XR_002470690.2 mRNA upstream 423363 17356774 ~ 17359570 (+) True LOC110505127
XM_021592615.2 mRNA downstream 72471 17858276 ~ 17937430 (+) False LOC110511937
XM_036970582.1 mRNA downstream 200202 17986007 ~ 18011922 (+) True LOC110511872
trnar-acg-3 mRNA downstream 263173 18048978 ~ 18049050 (+) True trnar-acg-3
XM_021592565.2 mRNA downstream 374848 18160653 ~ 18163990 (+) True LOC110511835
XM_036964123.1 mRNA downstream 389628 18175433 ~ 18178854 (+) False LOC118944496
TU261452 other upstream 984001 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 1135349 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 1267040 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 2086289 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 2538651 15243946 ~ 15244282 (+) True G227606
TU264064 other downstream 509549 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 784204 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 1065444 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 1440561 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 2041325 19827130 ~ 19844652 (+) True LOC110512505

Expression Profile