RNA id: TU263799


Basic Information

Item Value
RNA id TU263799
length 3528
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G230695
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17934850 ~ 17938417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAAAATTTTGCTCATTTAATTTCAAATTCTGTACATATTTTTACATAAATGGAAtgttataacatactgtatgtctaaaAAGTTTCTAAAATAACATTTCTAGGTATGTACTGTCGGCCTGTCTCTGAAGTACCTTGGGAGGTATAACCCAAATAAAAATAGTTTCCTTCACCTCTCAACTATTACATGAATGCCCTACTACACCTCCACCTTCATTCAAGCAAGCTCATCCCCAACTAATAATCATCTACAGTATGTTCGCTGTCATGGTATATTATAGTATCATGAACGGAACATCAACCTGATGACATATGTGTGTTCTCTAACATCTCACATTCATATATGTTGACTGTTTTAAACACTGCTTCTTCACAAGTCCATCCATATGGTGCTTTTCAACACGTAGATTTGGATAGACATCGATCCGATTGGATTGATATGGGCTCAAATTGGCAACTGTAGCATAAGCAGCAAAACCAAAACATTTACACAAAATGACCATATAACCCCCCTCCTTTACCACTGGCCTGACATCCAAACTGAATTCTCTACAGTAAAAACATAACGAAATCAGTTTAGGTGCTAGGCTGCCTCCCCACTCGCCCCCCAAAGAAACTCAAACATCCAAAATAAAAGACTAACAAAACTGAAATGGGGGTCAAATGTGATTTAAAACTGATTCTAGCTACAGTAGATCATATAAGGCTGTTCTGGTAGGCTAGCTAGGGAGGATCCTCGTGCTACACACATACCCATGACAATAAGGGCATATTGTACACATACAGTAGTATGCTTCAACAATCGTGAGCCATTCGACAGCATTTCAATAcacttacagtacagtagccATGGGACAAACCATGCGGTTAGACCAGACATTCTAGTTTCAGACCAGATATTCTAGTTTCTCCCTCACTGATGTGCAATGAGGATAAACTCCCATCTGGATTTAGATTAAACTTTATTAGCTATAGTACATGATGACAAATGGGGAAACAGTCCATTTGGGTGGGGGATTTTTATTGTCCCAATTCCAAAGTGCTTTATGCCTCACTGTAGTTCTTGAAAAATAAATTGTTAGCAGCATGTTATAAAGGCATGATGATGGCACTTTTGGAGAAACCACAGTTAATATGGTGTAACTGACCCAGTAGCCATGGTAACACTATCTTTAGTATATCCATACCATAACACCCAGATCCCCTATTAATGCTCTTTGTTAATTTGTCTGACTGGTTTGAATTGGGCAACCAATATAAATACTATTGATCTTATTCCTTGATATGTCATaataatatactataatctaAAATCCCTAAACTGTGGAGATGAAAAACTTCCACAATGATTGTGAAAAGCATAGCCAATAAAGCCTTTTGTCTATCAGTTTCTTACTCTGCCCTTATTCGCAACCCAATGGTGAAGATGGAGGTCTACTATACTTGTGTACTCGTTAGCAGCACATCCTGGGAAAGCTCTCAAAACATTAAAGAGAACAACAGCAAGGCCTTGTTTAAATATTACAACACAGGGTTGCTGGAAGCTGAAATGTATTAGATAGGAAATGTGCAAAACCTTCAAACACGTTGACAAAGTTTCAGGGGATCCAACATTCTAATGATAACTTTTTTGAAGACATCAGTCTTCCCCTTATTCTGATTGGCTTTGAAATGGAGCTCCACCAATCGTCTACTTCCTGCCCCGCCCTCTCACCTCTACTGTGATAGATTGAATGGTAGATGATTATGATTGGGTAAAAAGTGTGCTAGCTCAGGCAGCTATTTGAAACAGCACTGAAATGGACAAACATGAATAGAAGACATAGTTATTCATGTCATTCTCTTTGCATTAAGGCCCGACTTAGTTTCACTACaactcacacatacatacacagataTGCAATTACACCATTATGTCAAAACCTGCACACTTAAAATAAAATCATTTGCATAATAATAACTGCTAAGTCTCATGATGATAAATAAAGATTAAAAGtcaaagtgagtgagtgagagaagagGATGGGTGTGTGAACCCTGTAGAAGGCTAGAGTATATACACCACATAATGTCAACGGGCCCCTGGGGGAGGGGGATATCTGATCTGGGGTCAGCACATTGTAGCCTGGATCCCAACTGAAATGCTCCTCTTTACAATTGCCAAACTGAAGATGTACAGTAAAACACAGTGAAACACAGTAATTCAGTTGGGAATCAGGCTAAGCACAGAGGGCCTCATGTCCCAGTCAGACAGCTATTGCTGCTACAAAAACTAAGATTAACGTTCTCACTCCAGAGAAGTGCCTGCTGGGAGTTGTAGTTGCCACTAGCCGAGCCACACGCTTCTGGTAGCACAGTCCAGTTCACGTCTTGTTGCTACCACAGAGGCATTGAAGGGTTGTGAGTTAGATAGCTAGTCAGGGGAAAGGAGAGCGTGAGAAACAGAGGGTGGGACAGCATATAGCAGGGCACTTCTAATTTCAGTGTGGCTAGCAGCTAGCAGCATGTCCCAGTGGAGTAAAGGTTAGAGTTAAGCAGAGTTTCACATTCAGCTGAGTCTGGCTCTCTGCTgggtctctctccgtctgtcgtCATCCAGTCAACAACACACAGGGAGAAGGGCTAGGGAGGGAGGATTTAATATAGACAGATACCTGACCTCCTGCCCTCTGTCCCCCACCTACCATTcacactgttctgttgtcctgaCTCTGCCTTGGTAGGCCAGGATCCGAAGGTGAAGGCACTGGTAGACAGAGTTGGTGAGGATGGGgaaagagtgggagagggggatgagaactgacttccccctctcccctcagctTGCTCCCCGAAATGTCCAGGTGTACAATCACTCAGACCAAACAGATGGGAGGAGACCTGAATCTGCTGCCCAATAACACAGGAGGAGGGAATTCCAAGTCACAGTAGCCCTGGAGCTCAGCCAATCACAGCAGCACAATCACTGAGGCACGGCCAATGGGATGGAATGCAAAATGTCTGTGGGTGGCATATACAGCCGTTCCATTGATgcagcagagagtgagagggcgTGTTGAGAGCAACAGATTTTCCTGATTGGATAGTTGTGCAAAAGAGGTGGTGTCTTCCCTCAACATCAGGCTGTCGGATaagcatgctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctttgaggACAAAGCAGAGGTTGGTTGTATTTGTGAGTGTGCATTTGTGAgtttgtgtctgtctggtctTGTCTTGGAGCAAACTGTGTGTGTGAAGATAAAGAGATAGATCAGCATTAAATGTAGTTTCCCTGAAAATTGCTTTTAATGAGATTTGGCACACTGCGGTACTTGACTGGTTTGAGTGGAGGTGTTGAGGGCTGTTGAGACATACTGGAGGTGGTGGGGGTAGAGGggtagggtcaggggtcagttcTGTACTGGCCACAGAGTCACAGGGAAGGGGATGGGATTCACATTGAGGACTGTTGTTATTGGAACAGATCACTCTTCTTATCGAGGAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263789 lncRNA downstream 17535 17916923 ~ 17917315 (-) True G230689
TU263614 lncRNA downstream 217416 17644653 ~ 17717434 (-) False G230525
TU263613 lncRNA downstream 217416 17707941 ~ 17717434 (-) False G230525
TU263612 lncRNA downstream 217416 17714004 ~ 17717434 (-) True G230525
TU263608 lncRNA downstream 306036 17627361 ~ 17628814 (-) False G230523
TU263801 lncRNA upstream 11012 17949429 ~ 17949656 (-) True G230697
TU263804 lncRNA upstream 13265 17951682 ~ 17952044 (-) True G230700
TU263811 lncRNA upstream 32010 17970427 ~ 17970665 (-) True G230707
TU263814 lncRNA upstream 34438 17972855 ~ 17973230 (-) True G230710
TU263792 lncRNA upstream 36828 17975245 ~ 17975905 (-) False LOC110505118
XM_036970572.1 mRNA downstream 746503 17075513 ~ 17188347 (-) True LOC110503762
XM_036970568.1 mRNA downstream 746504 17075513 ~ 17188346 (-) False LOC110503762
XM_036970569.1 mRNA downstream 746504 17075513 ~ 17188346 (-) False LOC110503762
XM_036970570.1 mRNA downstream 746504 17075513 ~ 17188346 (-) False LOC110503762
XM_036970575.1 mRNA downstream 746505 17075513 ~ 17188345 (-) False LOC110503762
XM_021592611.2 mRNA upstream 2101 17940518 ~ 17947436 (-) True LOC110511923
XM_021592596.2 mRNA upstream 18831 17957248 ~ 17964836 (-) False LOC110511898
XM_021592602.2 mRNA upstream 18831 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA upstream 18831 17957248 ~ 17964878 (-) True LOC110511898
XM_021592592.2 mRNA upstream 29592 17968009 ~ 17969851 (-) True LOC110511884
TU262748 other downstream 886506 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1084651 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 1095011 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 2143685 15787622 ~ 15791165 (-) False G228191
TU260907 other downstream 2226585 15706234 ~ 15708265 (-) True G228098
TU263791 other upstream 36828 17975245 ~ 17977909 (-) False LOC110505118
TU263980 other upstream 155339 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 155339 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 661313 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1220883 19159300 ~ 19282138 (-) True LOC110511176

Expression Profile