RNA id: TCONS_00029219


Basic Information

Item Value
RNA id TCONS_00029219
length 2943
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_014807
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25088150 ~ 25149598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATCGATTCCTTTGAacagttcattttaaaaaacCACGCTTGCACACATAGAACATGTGATAAATAGGTGAAGAAGAATTCCACTCTGTCCTTCAGTAGTGGATTTGTCCATGGCTTTCCTGCAGAGGACCGGAGATTACTGCCACGCTCAACATCTGCACAtctaaacacagggagaacaccgAGCTTCGCTGATCTCTGGATGCACCGAGACGCTCTTCCCTTCACTGCCTGTGGTCCTGCCACCCAAAACTCCTCACTAATCTAATGGGGTGATCTTACCTCTCTGGCTACAGTAAGCCATTAGAGAGGGGATTCAAGATATCGGGGACTTTGAGAAGTCTTGCAGTGTTTTATTGACAAAGACAGACTGAACAGTGACAAGCTTCTTTCGCGTGAATTGGCTTGTAAACAGTTTGGACACTTGAGTCGGAAGGAAGCACAACTATGGCTCGCATGAACCGACCGGCCCCTGTGGAGGTGTGCTATAAGAACATGAGGTTCTTGATTACACACAACCCAACAAACTCCACCCTGAGCAGCTTTATTGAGGATCTGAAGAAGTATGGTGTCACGACAGTGGTCAGAGTTTGTGAGATAACTTATGATAAAACCCCACTGGAGAAGAATGGGATCACTGTTGTGGACTGGCCATTTGATGACGGTGCTCCTCCTCCATCTAAGGTCGTAGAGGACTGGCTGAGTCTCCTGAAAAGGCGCTTCATCGAGGAGCCCGGCTGCTGCGTGGCTGTGCACTGCGTGGCCGGTTTAGGAAGAGCTCCAGTACTCGTGGCTGTGGCCTTGATTGAAAGTGGGATGAAGTATGAAGATGCCATCCAGTTCATCAGACAGAAGCGCAGAGGTGCAATAAACAGCAAGCAGCTGACGTATCTAGAGAAATATCGGCCCAAACAGAGACTGCGCTACAAGCACCCGCACATTTTCAAGAACAAGTGCTGTATCATGTGACTGCGAAAGCAAACTCCACTGTTCTGAAGCCAGATCAAGCTGATGGACTGGGCCACAACCCATGCACTTTGCTGATTTGCTATTAAAACAAGAACTGATTTGGTCTGGACGAAAACCCCACTGGTGCCTCAATCCTCCTCACTTTGATTGTGGTGTGGAAACTGCCATGGCTTTTCTGAGGTCTAAAAGGCTGTGTATCTCCAAAGTTCAGGGGATAGAGTGAAAGCCGCCTTTGACCCTGCACCAGGACCGACTCCTAAATCATGCCTCAAATGATCGTGATTGTCTGAAAGAGCCAGTCAGTGTGAAAATGTGAattgtggatttaaaaaaaaaaaaatctgtgctctctcacttattttttttctttctaccgCTTTTCTGCTCTGCTTTTCCAGGagtctgttttgttttcagaTGACTATAGTTCCTTTAACACATTCAGTTTTCAGCACAAATCTTCTTATAGGTCAATTTTCCCATGATGCTTTTATGTTTTGTGAGCAAACAATGGTTACATTGGACTAATGAAGGGCTCATCTGAAAGAACTCTGCTGTTCCTATTAAAGCGAGTGCCAGACACTAAATTGTTTCTGTAAGCCACATGAAGGTCAATGAGTTTAACAACCAAGATGTTTCTTCTGCGTGTTTATCTGCTTAAAATCAGCCCTTGTGTTTGTTGAAGTAATTTTAATGTGATGGGACTGACTGCAGGGTCTGTTTATGATACTTGTCCATTCAGGTCAACAGAGATGGGATGGTAAAAAATGACCCTGTGTGAATGAATTCTGAGATGAGACTGTGGTTTAAAGTTGTTTTACTCTGTTTTTTTAAGGACACACCTCCAgctgcataataaaaataaaggctGTTGCAATCATGAATCCGGACTGTGTGTTTTGTTGTCAAGGGACTTCATCAGGTCAAATGGGAATGAATATTCCCTTACTGCCCTCTGCAGGACAAATATGCTCTGTGCTCTTGAAGAGCCCGCACAGACGGAGTCAAAAACAGATATTTTACCATAGCACTGACTTATGACATTTTTAGGTTAGAAAATTTAAGATTTATAATTGCCTTAATGGCTGAACATGAACTTATATCAAATACTTACTATGTTAATCAATCAGAGAGTATTAAATTGTTACCACTGCAAATTACTGGTTCAATAAATTAGCTCCTTAATTGTTTGGGCGTAAATGATTTAACAATTACCAATCACCGTAGGCTATGTAAcacataatttaaatacatgtcAGTCCCTCTTTGTAATATGTAGCCAGGCATCATATAAACTAAATGAAAACCCTAACTAAAGGCAAACACATTCTTGCTCAACttgtgtcaccacagcggaatgaacctacaatcccattaaaaataaacaaattacatagTCAAACTCAggctgtagccagcctggtgaaaggggtggttcttttttctcaaaatgtggacctttttgcagttatatgcCTCATATTCTATTCAATTAGGAgatttaaatgctgcattttaggGAAGTTTAAATCAGTATTTCTGCTGCATTAGCTAGTTGgctggtcatcataaccacactttttgatgtaccaaaaacatttcctaaagatttagaataaagaagaATAAAGaaaacataatgataataatgtagagcttcacattttttttacaagcctcttttggaaaaaaacaaaaaaaaaagaaaagaaacttgAAAATGCATGGAGAGCAAcaatagccaaaaaaaaaaagtattcaaatGAATTTAACATGGTCTGCTTTTAGTGCTTGACAAGTTTTTATTGGTAGTTTTTGTTTCAAgaaaggtccaagatttagaataaaagttacttgtaacaGGTTTTCTCTAATTAAACTATAGCGAAAGATGACTTCGCTTACATCCGATACAATTGTTAAGTAATTCTGAAGTGGGTTAACTGACTTTGAAACTTTAACTTAaacaggca

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2220 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within dephosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alar plate midbrain region; cephalic musculature; digestive system; germ ring; and nervous system. Orthologous to human PTP4A3 (protein tyrosine phosphatase 4A3).

Ensembl:

ensembl_id ENSDART00000162917

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029217 lncRNA downstream 2058 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029216 lncRNA downstream 2058 25084265 ~ 25086092 (-) True XLOC_014806
TCONS_00029208 lncRNA downstream 330081 24756545 ~ 24758069 (-) False XLOC_014799
TCONS_00030236 lncRNA downstream 330083 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029226 lncRNA upstream 5944 25155542 ~ 25157191 (-) True XLOC_014808
TCONS_00029239 lncRNA upstream 1580700 26730298 ~ 26736346 (-) False XLOC_014818
TCONS_00029241 lncRNA upstream 1582524 26732122 ~ 26736343 (-) True XLOC_014818
TCONS_00029778 lncRNA upstream 1629948 26779546 ~ 26780698 (-) True XLOC_014820
TCONS_00029779 lncRNA upstream 1637302 26786900 ~ 26788280 (-) True XLOC_014821
TCONS_00029215 mRNA downstream 6439 25072053 ~ 25081711 (-) True XLOC_014805
TCONS_00029213 mRNA downstream 82541 24994270 ~ 25005609 (-) True XLOC_014803
TCONS_00029212 mRNA downstream 99510 24982672 ~ 24988640 (-) True XLOC_014802
TCONS_00029211 mRNA downstream 129757 24938136 ~ 24958393 (-) True XLOC_014801
TCONS_00029207 mRNA downstream 330919 24752951 ~ 24757231 (-) False XLOC_014799
TCONS_00029227 mRNA upstream 13942 25163540 ~ 25271155 (-) False XLOC_014809
TCONS_00029228 mRNA upstream 13942 25163540 ~ 25301711 (-) True XLOC_014809
TCONS_00029229 mRNA upstream 202691 25352289 ~ 25427255 (-) True XLOC_014810
TCONS_00029230 mRNA upstream 285552 25435150 ~ 25464291 (-) True XLOC_014811
TCONS_00029231 mRNA upstream 363199 25512797 ~ 25519612 (-) False XLOC_014812
TCONS_00029214 other downstream 27273 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029210 other downstream 330826 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029209 other downstream 331176 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029189 other downstream 899407 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 905259 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029233 other upstream 368822 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029249 other upstream 1678583 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029261 other upstream 2023116 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029268 other upstream 2184932 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029282 other upstream 2314818 27464416 ~ 27464482 (-) False XLOC_014836

Expression Profile

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