RNA id: TU263836



Basic Information


Item Value
RNA id TU263836
length 243
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G230730
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18007067 ~ 18007309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCTCCAGGCAGCTCTCGTAGTTGAAGGTGGCCTTAAAGCCATAGATGGAGAAGGTGACGATACTGGCGAAGATGGAGGTGCTACTGTTGACCGTGGACACGACGATGGCCTGCTTCTCAAAGTTGTTGTTGTACTGGTTGTAGCTGGCAAAGGCGATGAGGGATCCAAAGCCCAGGCCCAGAGAGAAGAAGATCTGAGTGGCCGCATTGATCCATGTAGTGGGGTTAGCCAGCTGTTCCAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU263830 lncRNA downstream 3969 18002666 ~ 18003098 (-) True G230726
TU263831 lncRNA downstream 6680 17999630 ~ 18000387 (-) True G230727
TU263826 lncRNA downstream 16606 17990261 ~ 17990461 (-) True G230722
TU263824 lncRNA downstream 18194 17988640 ~ 17988873 (-) True G230720
TU263794 lncRNA downstream 21523 17975245 ~ 17985544 (-) True LOC110505118
TU263837 lncRNA upstream 1414 18008723 ~ 18009099 (-) True G230731
TU263838 lncRNA upstream 3212 18010521 ~ 18010735 (-) True G230732
TU263851 lncRNA upstream 7173 18014482 ~ 18015331 (-) False G230734
TU263849 lncRNA upstream 8174 18015483 ~ 18018436 (-) True G230734
TU263852 lncRNA upstream 11832 18019141 ~ 18019786 (-) True G230735
LOC110505118 mRNA downstream 29414 17975160 ~ 17977653 (-) False LOC110505118
XM_021592592.2 mRNA downstream 37216 17968009 ~ 17969851 (-) True LOC110511884
XM_021592602.2 mRNA downstream 42189 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA downstream 42189 17957248 ~ 17964878 (-) True LOC110511898
XM_021592596.2 mRNA downstream 42231 17957248 ~ 17964836 (-) False LOC110511898
XM_036970588.1 mRNA upstream 26034 18033343 ~ 18048841 (-) True LOC110511860
XM_021592571.2 mRNA upstream 42437 18049746 ~ 18085029 (-) True LOC110511851
LOC110503747 mRNA upstream 86395 18093704 ~ 18154474 (-) False LOC110503747
XM_021592560.2 mRNA upstream 173181 18180490 ~ 18182783 (-) True LOC110511808
XM_021592549.2 mRNA upstream 192749 18200058 ~ 18206177 (-) False LOC110511774
TU263791 other downstream 29158 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 958723 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1156868 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 1167228 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 2215902 15787622 ~ 15791165 (-) False G228191
TU263980 other upstream 86447 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 86447 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 592421 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1151991 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 1534793 19542102 ~ 19599101 (-) False rims2a

Expression Profile