RNA id: TU264074



Basic Information


Item Value
RNA id TU264074
length 232
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G230926
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18292245 ~ 18292476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GaccaatacatttacattttggtaatttagcagacgttGATCCTTAAAGGATTTGTTATGGGTATTCTCCTGTCCCAACCCTGGTACACCTGTCATTCAAACCATGACAGGTAGATACTCTGTACCTTCCTCTCCACATCTGGAGGGTCCATGTTGGGGACCTGTCGGATGGAGAACTTCCCTGTAACCTGTTTGGGGATGACAGTTTTGGTGCTTGGTTCTGAGAAGGCcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264141 lncRNA upstream 16361 18275487 ~ 18275884 (+) True G230984
TU264104 lncRNA upstream 73138 18218023 ~ 18219107 (+) True G230954
TU264100 lncRNA upstream 83695 18208323 ~ 18208550 (+) True G230952
TU264094 lncRNA upstream 96466 18195426 ~ 18195779 (+) True G230946
TU264088 lncRNA upstream 107854 18184157 ~ 18184391 (+) True G230940
TU264151 lncRNA downstream 4499 18296975 ~ 18297278 (+) True G230994
TU264152 lncRNA downstream 4846 18297322 ~ 18298246 (+) True G230995
TU264055 lncRNA downstream 5842 18298318 ~ 18305060 (+) False G230912
TU264057 lncRNA downstream 5842 18298318 ~ 18300591 (+) True G230912
TU264154 lncRNA downstream 12998 18305474 ~ 18305714 (+) True G230997
XM_021592539.2 mRNA upstream 61608 18219599 ~ 18230637 (+) True LOC110511763
XM_021592555.2 mRNA upstream 94566 18188613 ~ 18197679 (+) True LOC110511795
XM_036964123.1 mRNA upstream 113391 18175433 ~ 18178854 (+) False LOC118944496
XM_021592565.2 mRNA upstream 128255 18160653 ~ 18163990 (+) True LOC110511835
trnar-acg-3 mRNA upstream 243195 18048978 ~ 18049050 (+) True trnar-acg-3
XM_021592485.2 mRNA downstream 50851 18343327 ~ 18348845 (+) False LOC110511665
XM_021592488.2 mRNA downstream 52247 18344723 ~ 18348845 (+) True LOC110511665
XM_021592478.2 mRNA downstream 57149 18349625 ~ 18353319 (+) False LOC110511644
XM_021592475.2 mRNA downstream 57160 18349636 ~ 18353319 (+) True LOC110511644
XM_021592456.2 mRNA downstream 66602 18359078 ~ 18386819 (+) True LOC110511603
TU261452 other upstream 1493313 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 1644661 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 1776352 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 2595601 15688343 ~ 15696644 (+) True zgc:162160
TU260351 other upstream 3047963 15243946 ~ 15244282 (+) True G227606
TU264064 other downstream 2878 18295354 ~ 18296105 (+) True G230916
TU264434 other downstream 277533 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 558773 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 933890 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1534654 19827130 ~ 19844652 (+) True LOC110512505

Expression Profile