RNA id: TU264151



Basic Information


Item Value
RNA id TU264151
length 304
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G230994
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18296975 ~ 18297278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264074 lncRNA upstream 4499 18292245 ~ 18292476 (+) True G230926
TU264141 lncRNA upstream 21091 18275487 ~ 18275884 (+) True G230984
TU264104 lncRNA upstream 77868 18218023 ~ 18219107 (+) True G230954
TU264100 lncRNA upstream 88425 18208323 ~ 18208550 (+) True G230952
TU264094 lncRNA upstream 101196 18195426 ~ 18195779 (+) True G230946
TU264152 lncRNA downstream 44 18297322 ~ 18298246 (+) True G230995
TU264055 lncRNA downstream 1040 18298318 ~ 18305060 (+) False G230912
TU264057 lncRNA downstream 1040 18298318 ~ 18300591 (+) True G230912
TU264154 lncRNA downstream 8196 18305474 ~ 18305714 (+) True G230997
TU264458 lncRNA downstream 231785 18529063 ~ 18529365 (+) True G231277
XM_021592539.2 mRNA upstream 66338 18219599 ~ 18230637 (+) True LOC110511763
XM_021592555.2 mRNA upstream 99296 18188613 ~ 18197679 (+) True LOC110511795
XM_036964123.1 mRNA upstream 118121 18175433 ~ 18178854 (+) False LOC118944496
XM_021592565.2 mRNA upstream 132985 18160653 ~ 18163990 (+) True LOC110511835
trnar-acg-3 mRNA upstream 247925 18048978 ~ 18049050 (+) True trnar-acg-3
XM_021592485.2 mRNA downstream 46049 18343327 ~ 18348845 (+) False LOC110511665
XM_021592488.2 mRNA downstream 47445 18344723 ~ 18348845 (+) True LOC110511665
XM_021592478.2 mRNA downstream 52347 18349625 ~ 18353319 (+) False LOC110511644
XM_021592475.2 mRNA downstream 52358 18349636 ~ 18353319 (+) True LOC110511644
XM_021592456.2 mRNA downstream 61800 18359078 ~ 18386819 (+) True LOC110511603
TU264064 other upstream 870 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1498043 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 1649391 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 1781082 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 2600331 15688343 ~ 15696644 (+) True zgc:162160
TU264434 other downstream 272731 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 553971 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 929088 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1529852 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 2261498 20558776 ~ 20565712 (+) True G233521

Expression Profile