RNA id: TCONS_00029223


Basic Information

Item Value
RNA id TCONS_00029223
length 639
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_014807
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 25088150 ~ 25149598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTAATGATCCCCTTTCTATTTCCAACACGTCTCTTATTTTATAAgacttttcatttttaacaaatacTGCTTTTTCTGTCAGACCTACACTCTGTCCTTCAGTAGTGGATTTGTCCATGGCTTTCCTGCAGAGGACCGGAGATTACTGCCACGCTCAACATCTGCACAtctaaacacagggagaacaccgAGCTTCGCTGATCTCTGGATGCACCGAGACGCTCTTCCCTTCACTGCCTGTGGTCCTGCCACCCAAAACTCCTCACTAATCTAATGGGGTGATCTTACCTCTCTGGCTACAGTAAGCCATTAGAGAGGGGATTCAAGATATCGGGGACTTTGAGAAGTCTTGCAGTGTTTTATTGACAAAGACAGACTGAACAGTGACAAGCTTCTTTCGCGTGAATTGGCTTGTAAACAGTTTGGACACTTGAGTCGGAAGGAAGCACAACTATGGCTCGCATGAACCGACCGGCCCCTGTGGAGGTGTGCTATAAGAACATGAGGTTCTTGATTACACACAACCCAACAAACTCCACCCTGAGCAGCTTTATTGAGGATCTGAAGAAGTATGGTGTCACGACAGTGGTCAGAGTTTGTGAGATAACTTATGATAAAACCCCACTGGAGAAGAATGG

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2220 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within dephosphorylation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alar plate midbrain region; cephalic musculature; digestive system; germ ring; and nervous system. Orthologous to human PTP4A3 (protein tyrosine phosphatase 4A3).

Ensembl:

ensembl_id ENSDART00000148953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029217 lncRNA downstream 24274 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029216 lncRNA downstream 24274 25084265 ~ 25086092 (-) True XLOC_014806
TCONS_00029208 lncRNA downstream 352297 24756545 ~ 24758069 (-) False XLOC_014799
TCONS_00030236 lncRNA downstream 352299 24752531 ~ 24758067 (-) False XLOC_014799
TCONS_00029226 lncRNA upstream 36099 25155542 ~ 25157191 (-) True XLOC_014808
TCONS_00029239 lncRNA upstream 1610855 26730298 ~ 26736346 (-) False XLOC_014818
TCONS_00029241 lncRNA upstream 1612679 26732122 ~ 26736343 (-) True XLOC_014818
TCONS_00029778 lncRNA upstream 1660103 26779546 ~ 26780698 (-) True XLOC_014820
TCONS_00029779 lncRNA upstream 1667457 26786900 ~ 26788280 (-) True XLOC_014821
TCONS_00029215 mRNA downstream 28655 25072053 ~ 25081711 (-) True XLOC_014805
TCONS_00029213 mRNA downstream 104757 24994270 ~ 25005609 (-) True XLOC_014803
TCONS_00029212 mRNA downstream 121726 24982672 ~ 24988640 (-) True XLOC_014802
TCONS_00029211 mRNA downstream 151973 24938136 ~ 24958393 (-) True XLOC_014801
TCONS_00029207 mRNA downstream 353135 24752951 ~ 24757231 (-) False XLOC_014799
TCONS_00029227 mRNA upstream 44097 25163540 ~ 25271155 (-) False XLOC_014809
TCONS_00029228 mRNA upstream 44097 25163540 ~ 25301711 (-) True XLOC_014809
TCONS_00029229 mRNA upstream 232846 25352289 ~ 25427255 (-) True XLOC_014810
TCONS_00029230 mRNA upstream 315707 25435150 ~ 25464291 (-) True XLOC_014811
TCONS_00029231 mRNA upstream 393354 25512797 ~ 25519612 (-) False XLOC_014812
TCONS_00029214 other downstream 49489 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029210 other downstream 353042 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029209 other downstream 353392 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029189 other downstream 921623 24187594 ~ 24188743 (-) True XLOC_014788
TCONS_00029188 other downstream 927475 24182775 ~ 24182891 (-) True XLOC_014787
TCONS_00029225 other upstream 27343 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029233 other upstream 398977 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029249 other upstream 1708738 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029261 other upstream 2053271 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029268 other upstream 2215087 27334530 ~ 27336629 (-) False XLOC_014832