RNA id: TU264057


Basic Information

Item Value
RNA id TU264057
length 1635
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G230912
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18298318 ~ 18305060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCCCACTCAGGTCATCATACAATCATATTGATGTTCAATATCACACACACTTTTCTGTTATGTTACAAGTAATTTCACCCTTCTTCTTCATCATACCATCTATAAACCTGCAGCCACTTCTGTTTTTCCATGACAACGTCTTTGTAGTGCACTTAATTAGGGAAGTCcatgaaaaaaatgtatacacGTTTTGCTAAAATAGTAAAGACTCACCATAATGCTGAAGAAAAGAGTGTTTCCATGTGCCGAACTGCAATTTTTGCTGCTCTTTGTTTTTGTGAAACACTTCTTTATGTCTTGAAGTCAGGGATGGTATTGGGAAACACTTGTTCTTTATATATTGGCGTGGTGGATATTGGTTAACACTTGACAATGTTCTTTCTAAAGCATCCCAGACAAAAAAGATTCAGAAAACATATAGTGCGTCAAACCAGTTTTATTTTCTCTATCAAGTAGACATTTGTATGTGAatgagagagaaattgagagagagagagacattgagagagagaaaggaggaacgTGAGGGGGGAAGAAAgattcagaaagagagagagagagagcgagagagagaggcagagtgttGAGGCTATATCAGATGCCAAGAACTCACAGGGTTTCTGGAATGTTTTGCTTAGAGGGAAAGAAACAAGAAAAGTTACCAGTTAATGTCAGGAAAAAGGCTAAACAAAGCCAGACTCCACTGATGGGATCTCATACAAGCTAAACAATATAGAACTGTCTTATAACGGTGGTGATGAAAAGAGGTGCTCTCAGTCCTTCTTGAGATGGGCCACTTCATGGAGGTACGCGATGAACAACTTGGTCCCCTCTATGTAGTTGTACCTGGGAAAGGACTGCTCATCTTCTCGTTCTGGGAGTGGAGGCCATCGTCGAAGCCTCCGATGGGCATCATGATGATGCTCTTACCGGTCACGTCCTCAAAGGTCTTGGCGATGGGGATGGTTCCCCCTTCACGGATCAGGTCTGGCTCCACGTTAAACACTCTCTCTTCACGGCTGCTTTCCCTGCCTCGTACAGAGGGTGCTTGGTGTCTGCTAACCAGGGCTTAGCCCCGATGATCATGGTCACCTTCAACTTGTTGGGGCTCTTTCTCTTGGCAAACACAGAGTTCAGGTAGTCTGTAACCTACAACAGAACAAATATGTAACATTCATACATACAGTCTTCATGTCTATTTCATTAACTGAAACCAAAACTGAAATAGTCAATAACTGAAtagtaactgaactgaatgagcAGAATGAGGTACATTATAATAGTGTAACCTGGATGAATGTTCCCTTTTCTTGGATGTATTGTATAAAGAGAGTCTGAAGGTTATAACAATTCCAGAAATGTGTGTAACTGTGTATAACTGCATGTACACTGTAATTGTGTTGTCATGCAACTGTACAATGGACTGGGTGAGAGGTGTGTACCACCTACCTGTTTCTTGACCACTGCTGGGTCCATGTTGGGGACCTGTCGAATGGAGAACTTGGCAATGACCTTAGCAGGGATGACCGTCTTGGAGCCAGGGCCAGAGAAGCCCCCCTCGATGCCATGGATGGTAACAGTAGGGTAACGCCAACGATGGGCCAGCAGATCTACCTGAGAAATCAAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264152 lncRNA upstream 72 18297322 ~ 18298246 (+) True G230995
TU264151 lncRNA upstream 1040 18296975 ~ 18297278 (+) True G230994
TU264074 lncRNA upstream 5842 18292245 ~ 18292476 (+) True G230926
TU264141 lncRNA upstream 22434 18275487 ~ 18275884 (+) True G230984
TU264104 lncRNA upstream 79211 18218023 ~ 18219107 (+) True G230954
TU264154 lncRNA downstream 4883 18305474 ~ 18305714 (+) True G230997
TU264458 lncRNA downstream 228472 18529063 ~ 18529365 (+) True G231277
TU264460 lncRNA downstream 237039 18537630 ~ 18537829 (+) True G231279
TU264469 lncRNA downstream 247937 18548528 ~ 18548758 (+) True G231288
TU264429 lncRNA downstream 295352 18595943 ~ 18601890 (+) True LOC110511568
XM_021592539.2 mRNA upstream 67681 18219599 ~ 18230637 (+) True LOC110511763
XM_021592555.2 mRNA upstream 100639 18188613 ~ 18197679 (+) True LOC110511795
XM_036964123.1 mRNA upstream 119464 18175433 ~ 18178854 (+) False LOC118944496
XM_021592565.2 mRNA upstream 134328 18160653 ~ 18163990 (+) True LOC110511835
trnar-acg-3 mRNA upstream 249268 18048978 ~ 18049050 (+) True trnar-acg-3
XM_021592485.2 mRNA downstream 42736 18343327 ~ 18348845 (+) False LOC110511665
XM_021592488.2 mRNA downstream 44132 18344723 ~ 18348845 (+) True LOC110511665
XM_021592478.2 mRNA downstream 49034 18349625 ~ 18353319 (+) False LOC110511644
XM_021592475.2 mRNA downstream 49045 18349636 ~ 18353319 (+) True LOC110511644
XM_021592456.2 mRNA downstream 58487 18359078 ~ 18386819 (+) True LOC110511603
TU264064 other upstream 2213 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1499386 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 1650734 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 1782425 16513503 ~ 16515893 (+) True LOC118944532
TU260768 other upstream 2601674 15688343 ~ 15696644 (+) True zgc:162160
TU264434 other downstream 269418 18570009 ~ 18586841 (+) True LOC110511593
TU264626 other downstream 550658 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 925775 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1526539 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 2258185 20558776 ~ 20565712 (+) True G233521

Expression Profile