RNA id: TU264547


Basic Information

Item Value
RNA id TU264547
length 318
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G231363
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18681706 ~ 18682023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taataattgtacccacagttgatttcttcaaaccaagctgcctacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggcaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaagacttattttccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264429 lncRNA upstream 79816 18595943 ~ 18601890 (+) True LOC110511568
TU264469 lncRNA upstream 132948 18548528 ~ 18548758 (+) True G231288
TU264460 lncRNA upstream 143877 18537630 ~ 18537829 (+) True G231279
TU264458 lncRNA upstream 152341 18529063 ~ 18529365 (+) True G231277
TU264154 lncRNA upstream 375992 18305474 ~ 18305714 (+) True G230997
TU264550 lncRNA downstream 13880 18695903 ~ 18696158 (+) True G231366
TU264553 lncRNA downstream 15315 18697338 ~ 18698907 (+) True G231367
TU264566 lncRNA downstream 92683 18774706 ~ 18775431 (+) False LOC110511301
TU264561 lncRNA downstream 110832 18792855 ~ 18793714 (+) True LOC110511301
TU264606 lncRNA downstream 133542 18815565 ~ 18816290 (+) True G231419
XM_021592445.2 mRNA upstream 79801 18588699 ~ 18601905 (+) False LOC110511568
XM_021592444.2 mRNA upstream 79801 18596259 ~ 18601905 (+) False LOC110511568
XM_021592448.2 mRNA upstream 93458 18569698 ~ 18588248 (+) False LOC110511593
XM_021592456.2 mRNA upstream 294887 18359078 ~ 18386819 (+) True LOC110511603
XM_021592478.2 mRNA upstream 328387 18349625 ~ 18353319 (+) False LOC110511644
XM_021592320.2 mRNA downstream 5742 18687765 ~ 18692685 (+) True LOC110511366
XM_021592297.2 mRNA downstream 29613 18711636 ~ 18720405 (+) True LOC110511341
XM_036970942.1 mRNA downstream 38888 18720911 ~ 18793719 (+) False LOC110511301
XM_036970948.1 mRNA downstream 38888 18720911 ~ 18793719 (+) False LOC110511301
XM_036970955.1 mRNA downstream 38888 18720911 ~ 18793719 (+) False LOC110511301
TU264434 other upstream 94865 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 385601 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1882774 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2034122 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 2165813 16513503 ~ 16515893 (+) True LOC118944532
TU264626 other downstream 169226 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 544343 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1145107 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1876753 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1926270 20608293 ~ 20608725 (+) True G233545

Expression Profile