RNA id: TU264550


Basic Information

Item Value
RNA id TU264550
length 256
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G231366
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18695903 ~ 18696158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaagaatgctgttcattgactacagctcagcattcaacaccatagtaccctccaagctcatcattaagtttgggccctgggtctgaacccagccctgtgtaactgggtcctggacttcaaaacaacacctccactttgctgatcctcaacactggggccccacaagggtgtgtgctgagccccctcctgtactccttgttcaccaatgactgcgtggccacgtatgcctccaactcaatcaagtttgcagacgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264547 lncRNA upstream 13880 18681706 ~ 18682023 (+) True G231363
TU264429 lncRNA upstream 94013 18595943 ~ 18601890 (+) True LOC110511568
TU264469 lncRNA upstream 147145 18548528 ~ 18548758 (+) True G231288
TU264460 lncRNA upstream 158074 18537630 ~ 18537829 (+) True G231279
TU264458 lncRNA upstream 166538 18529063 ~ 18529365 (+) True G231277
TU264553 lncRNA downstream 1180 18697338 ~ 18698907 (+) True G231367
TU264566 lncRNA downstream 78548 18774706 ~ 18775431 (+) False LOC110511301
TU264561 lncRNA downstream 96697 18792855 ~ 18793714 (+) True LOC110511301
TU264606 lncRNA downstream 119407 18815565 ~ 18816290 (+) True G231419
TU264637 lncRNA downstream 168619 18864777 ~ 18865465 (+) True G231449
XM_021592320.2 mRNA upstream 3218 18687765 ~ 18692685 (+) True LOC110511366
XM_021592445.2 mRNA upstream 93998 18588699 ~ 18601905 (+) False LOC110511568
XM_021592444.2 mRNA upstream 93998 18596259 ~ 18601905 (+) False LOC110511568
XM_021592448.2 mRNA upstream 107655 18569698 ~ 18588248 (+) False LOC110511593
XM_021592456.2 mRNA upstream 309084 18359078 ~ 18386819 (+) True LOC110511603
XM_021592297.2 mRNA downstream 15478 18711636 ~ 18720405 (+) True LOC110511341
XM_036970942.1 mRNA downstream 24753 18720911 ~ 18793719 (+) False LOC110511301
XM_036970948.1 mRNA downstream 24753 18720911 ~ 18793719 (+) False LOC110511301
XM_036970955.1 mRNA downstream 24753 18720911 ~ 18793719 (+) False LOC110511301
XM_036970959.1 mRNA downstream 24754 18720912 ~ 18793719 (+) False LOC110511301
TU264434 other upstream 109062 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 399798 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1896971 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2048319 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 2180010 16513503 ~ 16515893 (+) True LOC118944532
TU264626 other downstream 155091 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 530208 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1130972 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1862618 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1912135 20608293 ~ 20608725 (+) True G233545

Expression Profile