RNA id: TU264553



Basic Information


Item Value
RNA id TU264553
length 469
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G231367
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18697338 ~ 18698907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATGATTCAGAGCTTTTATATTAATTTACTTTAGGCAAAACTGGAGACCAATTCACTGACAATTCTTTCCACAGAGACTTGTAagagggatttaaaaaaaaaaaaaatgaaacatcaATGTTGCATTATGATAATAGTCTCAAGACGGTCTATATTTAGAGTGTGAGCACAAGCTCCCTATCAACGAGATGTTTGGTGAATGATATTCTGTAGTCATATTGCTTGAGTCAAATAGAGTTCCCCTTTATCCTGTCTCTTACCAGTCTCCAGTAGAGATGGTGTAGTAGACAGGGGGTCTGGGTGAATCTGTGAAAGTAGACGGAGGGCCCAGGCTATAGGCACCAGCGTTGTTGAAGATCAGCCAGTCTCCCACACTGAGCTCTGGCAGCAGACACTGATCCACCACCTGGTCCAGCTCATCACCCGACGGACCCCACAGACTGCTGGCAAACACTGGTTCCTCAGACAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU264550 lncRNA upstream 1180 18695903 ~ 18696158 (+) True G231366
TU264547 lncRNA upstream 15315 18681706 ~ 18682023 (+) True G231363
TU264429 lncRNA upstream 95448 18595943 ~ 18601890 (+) True LOC110511568
TU264469 lncRNA upstream 148580 18548528 ~ 18548758 (+) True G231288
TU264460 lncRNA upstream 159509 18537630 ~ 18537829 (+) True G231279
TU264566 lncRNA downstream 75799 18774706 ~ 18775431 (+) False LOC110511301
TU264561 lncRNA downstream 93948 18792855 ~ 18793714 (+) True LOC110511301
TU264606 lncRNA downstream 116658 18815565 ~ 18816290 (+) True G231419
TU264637 lncRNA downstream 165870 18864777 ~ 18865465 (+) True G231449
TU264646 lncRNA downstream 173499 18872406 ~ 18872673 (+) True G231454
XM_021592320.2 mRNA upstream 4653 18687765 ~ 18692685 (+) True LOC110511366
XM_021592445.2 mRNA upstream 95433 18588699 ~ 18601905 (+) False LOC110511568
XM_021592444.2 mRNA upstream 95433 18596259 ~ 18601905 (+) False LOC110511568
XM_021592448.2 mRNA upstream 109090 18569698 ~ 18588248 (+) False LOC110511593
XM_021592456.2 mRNA upstream 310519 18359078 ~ 18386819 (+) True LOC110511603
XM_021592297.2 mRNA downstream 12729 18711636 ~ 18720405 (+) True LOC110511341
XM_036970942.1 mRNA downstream 22004 18720911 ~ 18793719 (+) False LOC110511301
XM_036970948.1 mRNA downstream 22004 18720911 ~ 18793719 (+) False LOC110511301
XM_036970955.1 mRNA downstream 22004 18720911 ~ 18793719 (+) False LOC110511301
XM_036970959.1 mRNA downstream 22005 18720912 ~ 18793719 (+) False LOC110511301
TU264434 other upstream 110497 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 401233 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 1898406 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2049754 16643351 ~ 16647584 (+) True LOC110503770
TU261485 other upstream 2181445 16513503 ~ 16515893 (+) True LOC118944532
TU264626 other downstream 152342 18851249 ~ 18851982 (+) True G231438
TU265246 other downstream 527459 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 1128223 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1859869 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1909386 20608293 ~ 20608725 (+) True G233545

Expression Profile