RNA id: TU264653


Basic Information

Item Value
RNA id TU264653
length 367
lncRNA type intronic
GC content 0.42
exon number 2
gene id G231460
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 18888377 ~ 18889148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTGTACTTATTATAGTTGCCATATACTGAGGTGTTCTAGTAGGAGAGTTGATATACTGAGGTATTCTAGTAGAGTTCATATACTGAGGTATTGTAGTAGGAGAGTTGATACACTGAGGTATTCTAGTAGGAGAGTTGATATACTGAGGTGTTCTAGTAGGAGAGTTGATATACTGAGGTATTCTAGTAGAGTTCATATACTGAGGTATTGTAGTAGAGTTGATATACTGAGGTagtctgtcccagctttgatgcgcctgtactgacctctctttcttgatgatagcggggtgaacaggcagtggctcgggtggttgatgtccttgatgatcttttcggccttcctatgacattgggtgctgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU264646 lncRNA upstream 15704 18872406 ~ 18872673 (+) True G231454
TU264637 lncRNA upstream 22912 18864777 ~ 18865465 (+) True G231449
TU264606 lncRNA upstream 72087 18815565 ~ 18816290 (+) True G231419
TU264561 lncRNA upstream 94663 18792855 ~ 18793714 (+) True LOC110511301
TU264566 lncRNA upstream 112946 18774706 ~ 18775431 (+) False LOC110511301
TU264658 lncRNA downstream 3528 18892676 ~ 18893090 (+) True G231464
TU264749 lncRNA downstream 130665 19019813 ~ 19021640 (+) True G231550
TU265139 lncRNA downstream 144676 19033824 ~ 19034146 (+) True G231890
TU265155 lncRNA downstream 154136 19043284 ~ 19043498 (+) True G231906
TU265192 lncRNA downstream 214688 19103836 ~ 19104046 (+) True G231936
XM_021592246.2 mRNA upstream 61655 18819001 ~ 18826722 (+) True LOC110511248
XM_036971020.1 mRNA upstream 75331 18801969 ~ 18813046 (+) False LOC110511268
XM_021592202.2 mRNA downstream 155159 19044307 ~ 19066203 (+) False LOC110511188
XM_021592207.2 mRNA downstream 155159 19044307 ~ 19066203 (+) True LOC110511188
XM_021592813.2 mRNA downstream 467624 19356772 ~ 19408498 (+) False LOC110512399
XM_036971061.1 mRNA downstream 467625 19356773 ~ 19408498 (+) True LOC110512399
XM_036971156.1 mRNA downstream 778450 19667598 ~ 19674027 (+) False LOC110512421
TU264626 other upstream 36395 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 301536 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 592272 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2089445 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2240793 16643351 ~ 16647584 (+) True LOC110503770
TU265246 other downstream 337218 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 937982 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1669628 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1719145 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 2374927 21264075 ~ 21264506 (+) True G234322

Expression Profile