RNA id: TU265200


Basic Information

Item Value
RNA id TU265200
length 214
lncRNA type intronic
GC content 0.40
exon number 1
gene id G231944
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19122211 ~ 19122424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacaaaaagagaactaattgacacattggaaagaattaacaaaaaaatagagcaaactagaatgttatttggccctaaacagagagtacacagtggcagaatacctgaccactgtgactgacccaaacttaaggaaagctttgactatgtacagactcagtgagcatagccttgctattgaaaaaggttgccgtaggcagacatggctctcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265192 lncRNA upstream 18165 19103836 ~ 19104046 (+) True G231936
TU265155 lncRNA upstream 78713 19043284 ~ 19043498 (+) True G231906
TU265139 lncRNA upstream 88065 19033824 ~ 19034146 (+) True G231890
TU264749 lncRNA upstream 100571 19019813 ~ 19021640 (+) True G231550
TU264658 lncRNA upstream 229121 18892676 ~ 18893090 (+) True G231464
TU265202 lncRNA downstream 4320 19126744 ~ 19127080 (+) True G231946
TU265203 lncRNA downstream 7282 19129706 ~ 19130051 (+) True G231947
TU265205 lncRNA downstream 11739 19134163 ~ 19134805 (+) True G231949
TU265235 lncRNA downstream 86022 19208446 ~ 19214698 (+) True G231978
TU265237 lncRNA downstream 92995 19215419 ~ 19220631 (+) False G231979
XM_021592202.2 mRNA upstream 56008 19044307 ~ 19066203 (+) False LOC110511188
XM_021592207.2 mRNA upstream 56008 19044307 ~ 19066203 (+) True LOC110511188
XM_021592246.2 mRNA upstream 295489 18819001 ~ 18826722 (+) True LOC110511248
XM_036971012.1 mRNA upstream 309165 18801971 ~ 18813046 (+) False LOC110511268
XM_021592813.2 mRNA downstream 234348 19356772 ~ 19408498 (+) False LOC110512399
XM_036971061.1 mRNA downstream 234349 19356773 ~ 19408498 (+) True LOC110512399
XM_036971156.1 mRNA downstream 545174 19667598 ~ 19674027 (+) False LOC110512421
XM_036971169.1 mRNA downstream 545174 19667598 ~ 19674027 (+) False LOC110512421
XM_036971162.1 mRNA downstream 545423 19667847 ~ 19674027 (+) False LOC110512421
TU264626 other upstream 270229 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 535370 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 826106 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2323279 16794699 ~ 16798932 (+) True LOC100653482
TU261556 other upstream 2474627 16643351 ~ 16647584 (+) True LOC110503770
TU265246 other downstream 103942 19226366 ~ 19234295 (+) True G231983
TU265650 other downstream 704706 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1436352 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1485869 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 2141651 21264075 ~ 21264506 (+) True G234322

Expression Profile