RNA id: TU265250


Basic Information

Item Value
RNA id TU265250
length 414
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G231987
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19235893 ~ 19243850 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atacatatgtgcagcttatgctcctccttcagattcatcatattatgatgatcagttttttgacaatctccagacagaaatcattacatttcaggcgcagggtaaagtgcttctttgtggagatttcaatgcaagaacaggttctgagcctgactacactgatgcgggaggtaaccaccacatatttggacacccctccttgtacagtagccctattataaataatagaaacagtcctgaccaaatactgaacaaaaatggaaaagagttagtacatctctgtcgagccttaggcctgtacatgcttaatggtagaatcagaggggactctttaggtcagtttacttactgctcagctcttgggacaagtgtagtcgattatgccatcactgacattgacccctcctccattag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265237 lncRNA upstream 15262 19215419 ~ 19220631 (+) False G231979
TU265241 lncRNA upstream 15262 19217821 ~ 19220631 (+) False G231979
TU265238 lncRNA upstream 15262 19218887 ~ 19220631 (+) True G231979
TU265243 lncRNA upstream 17410 19218252 ~ 19218483 (+) True G231980
TU265235 lncRNA upstream 21195 19208446 ~ 19214698 (+) True G231978
TU265259 lncRNA downstream 6743 19250593 ~ 19251036 (+) True G231996
TU265428 lncRNA downstream 47750 19291600 ~ 19294496 (+) True G232148
TU265493 lncRNA downstream 147952 19391802 ~ 19395926 (+) True G232205
TU265506 lncRNA downstream 170127 19413977 ~ 19418583 (+) True G232215
TU265599 lncRNA downstream 317359 19561209 ~ 19561545 (+) True G232297
XM_021592202.2 mRNA upstream 169690 19044307 ~ 19066203 (+) False LOC110511188
XM_021592207.2 mRNA upstream 169690 19044307 ~ 19066203 (+) True LOC110511188
XM_021592246.2 mRNA upstream 409171 18819001 ~ 18826722 (+) True LOC110511248
XM_036971012.1 mRNA upstream 422847 18801971 ~ 18813046 (+) False LOC110511268
XM_021592813.2 mRNA downstream 112922 19356772 ~ 19408498 (+) False LOC110512399
XM_036971061.1 mRNA downstream 112923 19356773 ~ 19408498 (+) True LOC110512399
XM_036971156.1 mRNA downstream 423748 19667598 ~ 19674027 (+) False LOC110512421
XM_036971169.1 mRNA downstream 423748 19667598 ~ 19674027 (+) False LOC110512421
XM_036971162.1 mRNA downstream 423997 19667847 ~ 19674027 (+) False LOC110512421
TU265246 other upstream 1598 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 383911 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 649052 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 939788 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2436961 16794699 ~ 16798932 (+) True LOC100653482
TU265650 other downstream 583280 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 1314926 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1364443 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 2020225 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 2042876 21286726 ~ 21287002 (+) True G234340

Expression Profile