RNA id: TU266200


Basic Information

Item Value
RNA id TU266200
length 912
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G232835
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19388032 ~ 19388986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTTGCCTCAGGGTCCCATATGACCACATCAGCATCACATCCCTTAGCGATCTTTCCCTTCTGGGGGTAGAAGTTGAAGATTTTCGCTGCATTGCTGCTGGTGACAGCTACAAATCGATTCTCGTCCATTTTTCCGCTATGCTGCGGAAAGTAATTACACAAAATACTGAGTTTCAATATTCTGGATATGAATGACAAACTCCATATTTACTGACATAATTAACCTGACCAAAGGTCAATGCTTAACGGTGCAGTAAGCGATTCAAAGTTTCACTCCAAATATCAAAACGTGTCATTTTTTGCCAGCGTTTTACAATGTTAATTTTTGCAATAGCCTCCGGGTCAACCGATCCTGAGAGAAGGGCAGAAAGAAGTAAGGGAGGAAGAAATAAATGgaaagagaaggacagaaagaaaGCTCGCCTGCTGCTTCATCCACTATGACAGTTTGATTCTGACTGATAAAAACTTCCTTGATGCACATAATAAATAGCATAATATAAATTGTTATCTTCTCTTCTCACAGCAGAAATGTCACTTGTCACCTTTTAAGTCCTACTATAGAACTTACTCAACCGTTTAAAAATAGTACCACTCATTTTTGTAGGACCTGTACCCTTGTCctggacaacaacaaaaacatcacTTTCAGTGGAGAATCTCCACGAGTATGCTTTTTGGTGTAGGGCTATAGGCTTCATCTGTCCGGGAAACTGGCCTATAGTGTGTATAATAAAGAATGATGTGATATGCAGAATGAGAGGCCTAACTGACAACGCCCTTCTCCCAAATGACAGACATCCTGTCCTCCACTCCGTTGACTCCATTGGGGATCTTTGTAAAGTCGTCTTTGCCCAGGGCTTTCTGACACACAGAGAATGTGCAGTTGTCTGTCCCAGTCACGCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265383 lncRNA downstream 154515 19225570 ~ 19233517 (-) True G232105
TU265337 lncRNA downstream 257049 19130646 ~ 19130983 (-) True G232065
TU265336 lncRNA downstream 258276 19129473 ~ 19129756 (-) True G232064
TU265335 lncRNA downstream 261001 19126692 ~ 19127031 (-) True G232063
TU265334 lncRNA downstream 266088 19121744 ~ 19121944 (-) True G232062
TU266156 lncRNA upstream 15933 19404919 ~ 19408499 (-) False G232802
TU266157 lncRNA upstream 15933 19404919 ~ 19408499 (-) False G232802
TU266158 lncRNA upstream 15933 19404919 ~ 19408499 (-) True G232802
TU266238 lncRNA upstream 82220 19471206 ~ 19471551 (-) True G232873
TU266249 lncRNA upstream 96826 19485812 ~ 19486777 (-) True G232883
XM_036971043.1 mRNA downstream 105664 19065512 ~ 19282368 (-) False LOC110511176
XM_021592216.2 mRNA downstream 363880 18826879 ~ 19024152 (-) False LOC110511207
XM_021592227.2 mRNA downstream 363880 18826879 ~ 19024152 (-) True LOC110511207
XM_021592221.2 mRNA downstream 485559 18826879 ~ 18902473 (-) False LOC110511207
XM_021592238.2 mRNA downstream 552702 18826879 ~ 18835330 (-) False LOC110511207
XM_036971122.1 mRNA upstream 27068 19416054 ~ 19424630 (-) False rims2a
XM_036971115.1 mRNA upstream 27068 19416054 ~ 19424631 (-) False rims2a
XM_036971108.1 mRNA upstream 27068 19416054 ~ 19582363 (-) False rims2a
XM_036971097.1 mRNA upstream 27068 19416054 ~ 19582365 (-) False rims2a
XM_036971132.1 mRNA upstream 27068 19416054 ~ 19582365 (-) False rims2a
TU265301 other downstream 105894 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 786157 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 1256978 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 1257946 18093756 ~ 18130086 (-) True LOC110503747
TU263791 other downstream 1410123 17975245 ~ 17977909 (-) False LOC110505118
TU266171 other upstream 153116 19542102 ~ 19599101 (-) False rims2a
TU266349 other upstream 259100 19648086 ~ 19648629 (-) True G232980
TU266428 other upstream 367218 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 1162797 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 1259785 20648771 ~ 20651696 (-) True glipr2l

Expression Profile