RNA id: TU265625


Basic Information

Item Value
RNA id TU265625
length 302
lncRNA type intronic
GC content 0.47
exon number 1
gene id G232322
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19605708 ~ 19606009 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTCAGTGTCATCTTGTCCTATACTCTCCCAATACACCCACACATGACAGGTCCAATCAGAACTGAGGACCAGAGGACCCTGAAACGCTACATCACACAGATAGACCAGCATGCATTTTGTACGACACATGTCAATCGGGTGTATCCTTGGAAACTAAAACCCTGGCTGACTTCATGTTATGGCGATTAGAATTGGTTTCGTCTCCACATTTTCCCCTGCAACATTCATTAGTCACGTGAATTATTTACCAGAGCTATCATTTTACCGTCCGTAtgcatgtactgtattttatttatttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265624 lncRNA upstream 1020 19604263 ~ 19604688 (+) True G232321
TU265621 lncRNA upstream 5329 19600173 ~ 19600379 (+) True G232318
TU265620 lncRNA upstream 5835 19599627 ~ 19599873 (+) True G232317
TU265599 lncRNA upstream 44163 19561209 ~ 19561545 (+) True G232297
TU265506 lncRNA upstream 187125 19413977 ~ 19418583 (+) True G232215
TU265636 lncRNA downstream 28683 19634692 ~ 19635057 (+) True G232333
TU265657 lncRNA downstream 152597 19758606 ~ 19762318 (+) True LOC110503829
TU265673 lncRNA downstream 156711 19762720 ~ 19765169 (+) False G232355
TU265674 lncRNA downstream 156711 19762720 ~ 19765169 (+) True G232355
TU265672 lncRNA downstream 168308 19774317 ~ 19775179 (+) True G232354
XM_021592813.2 mRNA upstream 197210 19356772 ~ 19408498 (+) False LOC110512399
XM_036971061.1 mRNA upstream 197210 19356773 ~ 19408498 (+) True LOC110512399
XM_021592202.2 mRNA upstream 539505 19044307 ~ 19066203 (+) False LOC110511188
XM_021592207.2 mRNA upstream 539505 19044307 ~ 19066203 (+) True LOC110511188
XM_021592246.2 mRNA upstream 778986 18819001 ~ 18826722 (+) True LOC110511248
XM_036971156.1 mRNA downstream 61589 19667598 ~ 19674027 (+) False LOC110512421
XM_036971169.1 mRNA downstream 61589 19667598 ~ 19674027 (+) False LOC110512421
XM_036971162.1 mRNA downstream 61838 19667847 ~ 19674027 (+) False LOC110512421
XM_036971191.1 mRNA downstream 61881 19667890 ~ 19672755 (+) False LOC110512421
XM_036971153.1 mRNA downstream 61887 19667896 ~ 19674027 (+) False LOC110512421
TU265246 other upstream 371413 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 753726 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1018867 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1309603 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2806776 16794699 ~ 16798932 (+) True LOC100653482
TU265650 other downstream 221121 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 952767 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 1002284 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1658066 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1680717 21286726 ~ 21287002 (+) True G234340

Expression Profile