RNA id: TU266349


Basic Information

Item Value
RNA id TU266349
length 544
RNA type TUCP
GC content 0.43
exon number 1
gene id G232980
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19648086 ~ 19648629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaataagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaaacgataacattgaaatggaaggagtatcagaccactgaaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagtggcaagaaaaaagcaatttcttaaagatatccataaaaagtgttgtttaaagtttgccataagccacctgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266347 lncRNA downstream 4095 19643780 ~ 19643991 (-) True G232978
TU266345 lncRNA downstream 5455 19642393 ~ 19642631 (-) True G232976
TU266341 lncRNA downstream 12944 19634807 ~ 19635142 (-) True G232972
TU266340 lncRNA downstream 13373 19633964 ~ 19634713 (-) True G232971
TU266289 lncRNA downstream 93544 19553135 ~ 19554542 (-) True G232921
TU266172 lncRNA upstream 2861 19651490 ~ 19652601 (-) True rims2a
TU266372 lncRNA upstream 25767 19674396 ~ 19675774 (-) True G233001
TU266370 lncRNA upstream 87455 19736084 ~ 19740224 (-) True G232999
TU266427 lncRNA upstream 107575 19756204 ~ 19757908 (-) False G233052
TU266463 lncRNA upstream 163134 19811763 ~ 19813710 (-) True G233080
XM_036971086.1 mRNA downstream 65718 19416054 ~ 19582368 (-) False rims2a
XM_036971097.1 mRNA downstream 65721 19416054 ~ 19582365 (-) False rims2a
XM_036971132.1 mRNA downstream 65721 19416054 ~ 19582365 (-) False rims2a
XM_036971108.1 mRNA downstream 65723 19416054 ~ 19582363 (-) False rims2a
XM_036971115.1 mRNA downstream 223455 19416054 ~ 19424631 (-) False rims2a
XM_021592817.2 mRNA upstream 6654 19655283 ~ 19667465 (-) True LOC110512409
XM_036971255.1 mRNA upstream 113747 19762376 ~ 19785561 (-) False LOC110512480
XM_036971271.1 mRNA upstream 115875 19764504 ~ 19785552 (-) False LOC110512480
XM_036971265.1 mRNA upstream 115875 19764504 ~ 19785554 (-) True LOC110512480
XM_021592859.2 mRNA upstream 194081 19842710 ~ 19851098 (-) False LOC110512516
TU266171 other downstream 48985 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 365948 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 1046211 18599730 ~ 18601875 (-) True G231652
TU263980 other downstream 1517032 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other downstream 1518000 18093756 ~ 18130086 (-) True LOC110503747
TU266428 other upstream 107575 19756204 ~ 19756618 (-) True G233052
TU266934 other upstream 903154 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 1000142 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 1529968 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 1529968 21178597 ~ 21180097 (-) True G234224

Expression Profile