RNA id: TU266427


Basic Information

Item Value
RNA id TU266427
length 1513
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G233052
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19756204 ~ 19757908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctCACCATCAGTATACACTCCCAGGCCATCCATCGTATAGGCAGCACGGCTCGCCCCTGGATGCGGTAGTAGTCTCCAGCGTACAGGTTTCTGCTCATCCCAAAGTCGGCGATCTTGATGGGTCTCTCCCCGCCCCGGTCGCCCCCGCTCTCGCCCTTCTCACCCCCCACCAGGCAGTTTCTTGTGGCCAGGTCACGGTGCACGAAGTTCAGAGACGACAGAAACTTCATCCCTGAAGCTATCTGACTGGCCATGGCGATCAGAGCAGGGTAACTGAGagggagggatgtgtggtggaaGAAGAGAAGAGATAAGAGGCAGAAATACAATATTTCAGATGCAGGTGTGTATGTATATGCATCTGTCTTCATGAAAACGTGTCACtgagtgtgtgtactctgtgtgtgtgtgtgtgttacggccCGGAATTGttctgaaccgtctcagtgcttctccttccaatagggcgcttcccctttaattcccaattaaatagccagcatcagctgcgcaaaagtggggttgtgatggagacgtgaatgaggatgtgttcaacccTCAGTTCCCAAGCTGCTctattctgtttgttttgttgccTTTAAAAGTGTTTTGTAGCCTAATAGCTAGTTTACCCAGGATTGGATGcactctttgcgtccgtggactacacctctctgttgttcttcgtggcctttctcaGACAgagatctgttggcggattggattgtctgactgactacaacctttttgtatacggtatttcatttgttttggggTGATGTATACCGTGATGATTTGTAGTTAGTTGTAAGTGAGGACGTATTAGTATTTGATACGCTTTATAGTTGTGTGGTAAAATAATTGTTgttttgattgtatgatttgatACTGGGTGTACGCTACACTtgaatgaacggacaaacattgcgtgactaaggtcacttgagttccctgaactcctttaccgggctggactcttttaGGCCcaaggtacaggacatttctggaggagcCAGAGCTCATTATTTATTATattgttatgtgtgtgtgatcATTTATGTTggtaatacaacccacgcaaaagaatacagttgtttttgaagttattttcaatgttttaagggtttatgaaaggTGTATTGacttttacataagtcctttgtattggtgtagacttgacggaccagatgggactcattccctcacaaaccaaaaggagaaaccaatgttaggcacaacctacctggcacccctattaataataacctcaagtcaaaaccattagtgtgtgtgtgtactatgtgtGCGTATTACctgatggtgggggtgttgtgtGTGGGTCCAGTCTTGTCCAGCAGGACTCTGTGTGAGagGTACTGGTTGAGGTCGCCACTCTCCATGTACTCTGTGACCATACAGAGAGGGTCGCtgctcacacacactcccaacaGACTGATGATGTTGGGGTCCTTCAAACGAGACAGAATCTTCCCCTCCTTTAGGAAGTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266370 lncRNA downstream 15980 19736084 ~ 19740224 (-) True G232999
TU266372 lncRNA downstream 80430 19674396 ~ 19675774 (-) True G233001
TU266172 lncRNA downstream 103603 19651490 ~ 19652601 (-) True rims2a
TU266347 lncRNA downstream 112213 19643780 ~ 19643991 (-) True G232978
TU266345 lncRNA downstream 113573 19642393 ~ 19642631 (-) True G232976
TU266463 lncRNA upstream 53855 19811763 ~ 19813710 (-) True G233080
TU266465 lncRNA upstream 60385 19818293 ~ 19821202 (-) True G233082
TU266441 lncRNA upstream 69434 19827342 ~ 19844650 (-) False LOC110512516
TU266442 lncRNA upstream 81235 19839143 ~ 19844650 (-) True LOC110512516
TU266473 lncRNA upstream 94324 19852232 ~ 19852446 (-) True G233090
XM_021592817.2 mRNA downstream 88739 19655283 ~ 19667465 (-) True LOC110512409
XM_036971069.1 mRNA downstream 103638 19416054 ~ 19652566 (-) False rims2a
XM_036971142.1 mRNA downstream 103640 19416054 ~ 19652564 (-) False rims2a
XM_036971075.1 mRNA downstream 103641 19416054 ~ 19652563 (-) False rims2a
XM_036971086.1 mRNA downstream 173836 19416054 ~ 19582368 (-) False rims2a
XM_036971255.1 mRNA upstream 4468 19762376 ~ 19785561 (-) False LOC110512480
XM_036971271.1 mRNA upstream 6596 19764504 ~ 19785552 (-) False LOC110512480
XM_036971265.1 mRNA upstream 6596 19764504 ~ 19785554 (-) True LOC110512480
XM_021592859.2 mRNA upstream 84802 19842710 ~ 19851098 (-) False LOC110512516
XM_021592867.2 mRNA upstream 84802 19842710 ~ 19851099 (-) False LOC110512516
TU266349 other downstream 107575 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 157103 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 474066 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 1154329 18599730 ~ 18601875 (-) True G231652
TU263981 other downstream 1626118 18093756 ~ 18130086 (-) True LOC110503747
TU266934 other upstream 793875 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 890863 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 1420689 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 1420689 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 1687580 21445488 ~ 21455716 (-) True LOC110513321

Expression Profile