RNA id: TU265674


Basic Information

Item Value
RNA id TU265674
length 2395
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G232355
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19762720 ~ 19765169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGCCTTTAGGTTGAGAGAAAAATGGGAATCTTTCAACTTAGTCAGGCACTTGGTAACAAAATGCATAGACAGCCAGATCGCATGTAAGCTTTGGGGTAGTATTCAATCCGGTAGAGAGAAGTAGCTTCTAGAATCCTGAGCAGCGGTATAGAATTAGaaggattctatttctatggtataGAACAAGTCCCTAACAACTACAACAACCCTGTACTACAAAAGGATCAAACCAGCACGACAAAAATACCCCATTCTAATGATAATATTACGATATGAAAGGATAGCTCCTAATTCAAATGTATATTGTCTACTCCAATCTATAGAAGGTTCCTGTATACCCCACTGGACCATACAACTTAATGGAAGTCCACTACTTTAGTGTTTTTGCCTGTTCCATTGTCATTGTCAAGGGAAACATGTTTGGCATGGCAATTCTATAAGGATTTGaaaagagagcagaaacagactggcacccattCCCCTCTTCTACACACATACCTTCACCTCAAACAACACCAGACACCACGTGACTGACAGTACACCTGACCTAGAGAGACCTCTGAGGTTAGCCTTCAGCAGGAAATCCCCAGtctgctccctccctcttccttccaATCACTTCACAGAATATCTCCACCTTTATACAGTTGTAGCACAGTAGAAGCTCTGATCGAAGGCCTGTCTGTCTAATAAGTCTAGGGTTTAGAAACACACTGGAACTAAGCCATAATGGTGTACATGACAATCTGTCTGTTGGATAAACAACAGTATAGTAACAGAATCTGTAGTTCCTTGTTTATTGCTTTGGTAATTAGATTAGGTACCATCAGTCGGTACTCCATTGATTGTGTCTATGCCAGTATTGTACCAACACAGAAGAGGTTTAGTGCCAACCCATCATATAGTTCGTGATGTCATCCCCCACAAATGGCAGAGTCATGGCAAAAAGCCCACAAATCATAAAACAGACTTACAAAAAACAGCATAATCTGCATGTAACTTGGCTTCTATTGTAATATGGCTTGTAGTGATATGATTAATTAGACTCTAAAACAAGGCACTGGCCATTCTAGAGTGTCATCTTAGAGATATGAGTAGATAGACTGATCTAGAGTCTACTGTCAGGGGAGCACATAGTGGAAAACCACTTTGTCCATACGGTGGTAGACAGAGGTACTGGAATGCTGTACGGCATGCAGaagtcatgtataaaaatgacTACCATTATCTAAATTCTGATTGTGGACATTTCTTCATTTCTTCCCAGTGAAAGTAAAAAGCATTTCTTCATTTTCAAAGCAATTGATAGCAACTAAGCAAGCTTCCGATGctgagaaccttctagaactGCAAATGTTGACAAAACAATCAGCTGACAAACCCAACAATAACATGGATGACCTCATACTGACACGATTATTTCCTACATCATTTCTCAAACACAACCACATCCCAATGAAATAACATTCTAGGAATTACAACTATGTGACAGTTGAACAGTTTATATGGACCCAAACCTgtaatggagggagacagaggcagGCTTGAAGCAgtgattaaaacacactgaatAGCGGACGGAGAGAAGAGTACAGAATGGTGGAGGAGGCGGAGTTACTACCAGAACGACGAAGGCCGTGTCATGCTAGTCCAAAGTGCTTTTCTTTCCTTCATCCAAGCTGAACTAACCAGTTATGAATGACCAGGACACACACTCCCCCAGTAGGCTTACAACATACAGCTTGGAACCATCCTCTGTTTTCAGATCAGTGCCAACAAGGACCAGGAAGCAAGAGGGGAGGTCGAATAAGAGTGTTGAGACATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCAGACAGACAACTACACTAGGTAATAATAATTATAGGCACAAGGAGGCAGTATGGAGTTCCTGGTCTGGCGGGAGACATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCATGCCCTAAGGAGACAGGCatgcagacagacatgccctaaggagacaggcatgcagacagacatgccctaaggagacaggcatgcagacagacatgcagacagacatgccctaaggagacaggcatgcagacagacatgcagacagacaactACACTAGGTAATAATAATTATAGGCACAAGGAGGCAGTATGGAGTTCCTGGTCTGGCGGTGCAGGCTGTCTCAATAACTAGGCTCCATTCTCAGCCCATTCGGGTGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU265657 lncRNA upstream 402 19758606 ~ 19762318 (+) True LOC110503829
TU265636 lncRNA upstream 127663 19634692 ~ 19635057 (+) True G232333
TU265625 lncRNA upstream 156711 19605708 ~ 19606009 (+) True G232322
TU265624 lncRNA upstream 158032 19604263 ~ 19604688 (+) True G232321
TU265621 lncRNA upstream 162341 19600173 ~ 19600379 (+) True G232318
TU265672 lncRNA downstream 9148 19774317 ~ 19775179 (+) True G232354
TU265734 lncRNA downstream 67873 19833042 ~ 19834477 (+) True G232413
TU265735 lncRNA downstream 85791 19850960 ~ 19851271 (+) True G232414
TU265736 lncRNA downstream 86628 19851797 ~ 19852031 (+) True G232415
TU265667 lncRNA downstream 87544 19852713 ~ 19857677 (+) True LOC110512558
XM_036971226.1 mRNA upstream 391 19698808 ~ 19762329 (+) False LOC110503829
XM_036971243.1 mRNA upstream 3250 19695123 ~ 19759470 (+) False LOC110503829
XM_036964138.1 mRNA downstream 36070 19801239 ~ 19801909 (+) True LOC110503837
XM_036971287.1 mRNA downstream 37817 19802986 ~ 19819461 (+) False LOC110512494
XM_036971312.1 mRNA downstream 37817 19802986 ~ 19819461 (+) False LOC110512494
XM_036971304.1 mRNA downstream 37888 19803057 ~ 19819461 (+) False LOC110512494
XM_036971297.1 mRNA downstream 37961 19803130 ~ 19819461 (+) True LOC110512494
TU265246 other upstream 528425 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 910738 18851249 ~ 18851982 (+) True G231438
TU264434 other upstream 1175879 18570009 ~ 18586841 (+) True LOC110511593
TU264064 other upstream 1466615 18295354 ~ 18296105 (+) True G230916
TU261452 other upstream 2963788 16794699 ~ 16798932 (+) True LOC100653482
TU265650 other downstream 61961 19827130 ~ 19844652 (+) True LOC110512505
TU266948 other downstream 793607 20558776 ~ 20565712 (+) True G233521
TU266973 other downstream 843124 20608293 ~ 20608725 (+) True G233545
TU267841 other downstream 1498906 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 1521557 21286726 ~ 21287002 (+) True G234340

Expression Profile