RNA id: TU266480



Basic Information


Item Value
RNA id TU266480
length 443
lncRNA type antisense_over
GC content 0.61
exon number 3
gene id G233096
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 19871266 ~ 19872229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATCCAGGACATCCTCATCTGTAACACAGGAAGTGAACAAAAATCACTGGGCAGAATACTCCATTCCACTGTAAATGATCATCATTTGAGAGAAGATCTTACCCTGTCTGAGGGTGACCTTGTCAGTGGAGACGTTGAAGCGCTTGGCAGCTTTATCTCTGGcgtcctcctctgtcctcccactCACCCAGTAATGACCATCCATGTCCTCTCCTGGTGTGACTGAAGGGTCGTTCACAGTGACAAAGTAGGCTGGGATCCTGTGACCCCACCACAGCTGACGAGAGATACACCAGtccCTGATGTTGTCCAACCAGTTGAACCAGGTCTTATGGTGGTGGTCTGGGATGATTTTGAGTCTTCCCTCCCGGACCGAGTCAGCTGCCTGCTTGCCCATGTCAGCACAGTCCACATACCACTGAGGCTTCAGCAGGGGCTCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU266444 lncRNA downstream 7384 19863298 ~ 19863882 (-) True G233064
TU266473 lncRNA downstream 18820 19852232 ~ 19852446 (-) True G233090
TU266441 lncRNA downstream 26616 19827342 ~ 19844650 (-) False LOC110512516
TU266442 lncRNA downstream 26616 19839143 ~ 19844650 (-) True LOC110512516
TU266465 lncRNA downstream 50064 19818293 ~ 19821202 (-) True G233082
TU266487 lncRNA upstream 26212 19898441 ~ 19905535 (-) False G233098
TU266486 lncRNA upstream 28857 19901086 ~ 19920613 (-) True G233098
TU266528 lncRNA upstream 89504 19961733 ~ 19997877 (-) False G233136
TU266529 lncRNA upstream 120456 19992685 ~ 19997877 (-) True G233136
TU266553 lncRNA upstream 142997 20015226 ~ 20018106 (-) True LOC110512652
XM_021592863.2 mRNA downstream 20158 19842710 ~ 19851108 (-) False LOC110512516
XM_021592868.2 mRNA downstream 20162 19842710 ~ 19851104 (-) False LOC110512516
XM_021592867.2 mRNA downstream 20167 19842710 ~ 19851099 (-) False LOC110512516
XM_021592859.2 mRNA downstream 20168 19842710 ~ 19851098 (-) False LOC110512516
XM_036971265.1 mRNA downstream 85712 19764504 ~ 19785554 (-) True LOC110512480
XM_021592895.2 mRNA upstream 5268 19877497 ~ 19895676 (-) False LOC110512609
XM_021592890.2 mRNA upstream 5268 19877497 ~ 19895848 (-) True LOC110512609
XM_036963613.1 mRNA upstream 42291 19914520 ~ 19931740 (-) False g6f-like-b
NM_001195273.1 mRNA upstream 42459 19914688 ~ 19927579 (-) True g6f-like-b
XM_021592906.2 mRNA upstream 142363 20014592 ~ 20018502 (-) False LOC110512652
TU266428 other downstream 114648 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 222637 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 272165 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 589128 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 1269391 18599730 ~ 18601875 (-) True G231652
TU266934 other upstream 679554 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 776542 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 1306368 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 1306368 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 1573259 21445488 ~ 21455716 (-) True LOC110513321

Expression Profile