RNA id: TU266912


Basic Information

Item Value
RNA id TU266912
length 3185
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id G233491
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20529880 ~ 20533496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttcgTGTAAATAAAAATCTAAGACAATTATGGTACTAATAATTGCTTCTCTTACaccatatgtacagtatgtccttCAACCGATTATTTTAAAATCACACAAGTTATAAGGACAATTTAGTagctaatggcagcctgcagtatCCCGGTCATCCTTCAACTTAAATTACTCAATGAGAGAGGCAGCACTAAACTTGTCTGCAACGTCCCTTCTTGGATTAGCTCCAACTGTGCATGTTATGTCTACATGAATCTACATCTTAACTGACTTCATTTGGCTTCAATTCGCTGTTGAGTCTTCATAAAGGAATGAATGGCGTCACGTGATCGATGGCTTGGTCCACTATATACAGTCATTGGCTTGACCCTACATACCATAACTCCAAGGAAATGTTTTATTGCGAAAAGATTTATCAACATATTCATACTTGCAGACACCAGTGAATTCCTACCCAAAGAAACTAGTTTTTTCTCTTGAAGTCATATACAGTAAAGTGAACAAAGGATCAATTGTCAAGGAGCCCAATCTTTTTTTTTGTGACCAACTTTTTATTTAGTTTGGTAATTTTTCTTTTTCAAAAGAGGGATACAGGTACAAGTGCAAAATAAATGCATACAAAGATAACCCGGACCCATTCCCACCTCAGTCCCTGTCAGATATGTGAGTGAAGCGGAGTTGGAGTGGagcgtgcccaatttgactggagcttTGGCCTTCTCACTCGCTCCAGTAGCGTTCCAGTAGTGGTCACTTCTGGAGCTGAGGGCATAcccggcccagcatgcatttgtagtctacttgtgtgcttGCTTTAGACACTGTCAGAGTtcactaaatattttcataaagaaactaataaaacacacaggtgctaaatcaaggtgacttacaaagatgaggagcAAGAGAGGCGGTGCGATGATTTAGTGTCCACAACCaaagaatcattgtggaatctcaatcgcactccacactgccctttcccacctggacaaaagaaacacctatgtaagaatgctgttcattgactacagctcaccattcaacaccatagtgccctcaaagctcatcactaacctAAGGACCCTGGCactaaacaactccctctgcaactggatcctggacttcctgatgggccgaccccaggtTATAAAGGTAGGCaataacacatctgccacgctgatcctcaatacgggggcccctcaggggtgcagcttagtccactcctgtactccctgatcaCCCACAACTACGTGGGCAAGCACCAGTCCAACACCATAATTTAGCTGTCTGACAACAcaatactgtcacgccctgaccttagagatcatttttatggttctcagtcagggacagctgtctattgttgtctctgattgggaaccatacttaggtacccttttttccacctgtgtttgtgggaagttaactttgtttgatggCACATAGCCTTAAGCGTCACGGTTTGtttggtattgtttattgttttgtcggcgtcatttcttaaagtaaaatgtacgctcaccacgctgcaccttggtcctcatccTTCAACAGTCATGACATGTATCCCTACAAGGAAGCAACCCCCGTCTGTAGGTCACTTCAATATATTGTCCATTGTTCATTAATTGGTGTGGAGTCAACATTGTCTAAATGTCCTGGAACATAGGAAATAAGTCCAATGttcagcaataataataataataattgtgttGCTTTAACCCAATTGAGTGGGTttcctcatcattgtcttaggaGAACAATCTTATGAAAGGTTTGGTATTTTCTTATCGACCAGAAGCCTCGATCCAGTTCAGAAGAGATTCATTGATctaaaatctgtcattttaagaTTGCAGCCAAACGCTTATGTAAGGGATTTCTTCCATTGACGGAGaggtggaccaaagcgcagcgtggttattttgactcatgctttaataaatcacttcacatgaacaaactaagaaaaacaagaaccgtgaaaacccaaaacagccctatctggtgcaagagacaggaacaatcacccacaaacacacagtgacacccaggctacctaagtatgattctcaatcagagacaactaatgacacctgcctctgattgagaaccatactaggccgaaacatagaaatacccaaatcatagaaaaacaaacatagactgcccacccaactcacgccctgaccatactaaataatgacaaaacaaaggaaataaaggtcagaacgtgacagcttaTCTCATATAACAGACATTAAATAGATCTTTCAATCTGctattttttatttgaaaatacaAAACTCACCTCATGAACAGTCAGGGAAGAAGAGGGTGCAATTTCAATAACATGATTTGTTTGGCTTGAGGGATGTTGGCAAGATGTATGGATACAACATGGATGGGAACCACAACCAGCATAGAACAGGCATACTGTATCTGCGGCCCAAAgagcaccctcttccctatatagtgcattacctttgaccagggctcttAGGGTGTTTATAGACAATGAAGGGCTAtagtcataagtagtgcactatatagggaatagggtgccatttaagacacACCCTGTGTCTTTAGGCTGGCTGGGACCTTGAGGAGGCTTCCATGTCTGTCGCAGGCACCCCCTGCCTGGATGAAATGAATGTGCTGCTGGGTGCCTTCTGGGCCATTGGATTCACAAATCCCTGTTTAGTCTCAGTCTCTTGTCGTGGATGTGCTGCAGCAGTATCCTCCCTCTCTGCTCAACAGTGTGGATGAGAGGTTTCAGGCCACGTGCCCCCCCTCGGCTCTCCCAGAATTGCTTGTCCATATACAGAGAGCTCAGGAGCATGCTCTCCAAGCAGCCAGACTGGAGAACTGATACAGCTCTCTCTGGAACTCATCGATGCCCTCTACTAAGCGGAAGTTGAGGTTGTCATGGGGATGATTTGGCCTGCCTGCATTGTCTATAAACACTAGTCTGGTAGGCTCTACCCTCCTCACCTGTAGAAAATAAACATAGACAGACACAGTATAGTTTAGCATAAATTTTGTCTTATCAAATAGTTCAGCAGGTTCAGTGGAAAGAGGGAGTCATTTTTCCACAAAGCAGTTGTAAAAGAATAGTGATCATCTTTATCCAACATCGGAATGATCTTTGTTAAGAAGAAAAGGTCTGGATAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266895 lncRNA downstream 21515 20506750 ~ 20508365 (-) True G233479
TU266894 lncRNA downstream 24254 20505226 ~ 20505626 (-) True G233478
TU266890 lncRNA downstream 28533 20501109 ~ 20501347 (-) True G233474
TU266891 lncRNA downstream 29471 20500147 ~ 20500409 (-) True G233475
TU266887 lncRNA downstream 32356 20496886 ~ 20497524 (-) True G233472
TU266935 lncRNA upstream 18719 20552215 ~ 20552450 (-) True G233514
TU267374 lncRNA upstream 120701 20654197 ~ 20654460 (-) True G233914
TU267377 lncRNA upstream 122705 20656201 ~ 20656503 (-) True G233917
TU267407 lncRNA upstream 168709 20702205 ~ 20709007 (-) True G233942
TU267420 lncRNA upstream 196326 20729822 ~ 20730058 (-) True G233955
XM_021592921.2 mRNA downstream 254572 20272374 ~ 20275308 (-) True LOC110512719
XM_021592920.2 mRNA downstream 259508 20262526 ~ 20270372 (-) True LOC110512703
XM_036971419.1 mRNA downstream 439183 20023910 ~ 20090697 (-) True dnah5
XM_021592906.2 mRNA downstream 511378 20014592 ~ 20018502 (-) False LOC110512652
NM_001195273.1 mRNA downstream 602301 19914688 ~ 19927579 (-) True g6f-like-b
XR_005039838.1 mRNA upstream 19257 20552753 ~ 20554867 (-) True LOC118944500
XM_021593013.2 mRNA upstream 30152 20563648 ~ 20581532 (-) True LOC110512912
trnat-ugu-31 mRNA upstream 49784 20583280 ~ 20583352 (-) True trnat-ugu-31
XR_002471931.2 mRNA upstream 56950 20590446 ~ 20595555 (-) False LOC110512925
trnat-ugu-32 mRNA upstream 58560 20592056 ~ 20592128 (-) True trnat-ugu-32
TU266428 other downstream 773262 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 881251 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 930779 19542102 ~ 19599101 (-) False rims2a
TU265301 other downstream 1247742 19159300 ~ 19282138 (-) True LOC110511176
TU264859 other downstream 1928005 18599730 ~ 18601875 (-) True G231652
TU266934 other upstream 18287 20551783 ~ 20551997 (-) True G233513
TU267325 other upstream 115275 20648771 ~ 20651696 (-) True glipr2l
TU267728 other upstream 645101 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 645101 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 911992 21445488 ~ 21455716 (-) True LOC110513321

Expression Profile