RNA id: TU267407


Basic Information

Item Value
RNA id TU267407
length 482
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G233942
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20702205 ~ 20709007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcggagcgcgctcccactcaaacacatgcatcagtTTAAATACagatcatgacgtcatttcaCTGCCTTAACCGAACCCCCTCCTCTCGACAGGACAAAgtaaggtgaaaagttcattctaacttactaacacactcccagataacttttgacccctcaacattatcgatcaccactgaactgacagttttaattaacagaaaccctaggaatgcactcactgccttatctaaaaaccccagagctaagtttcaggttgggtcaaccataggctaacgaccttatgtgtttacacagtccacaacccatttgttcctgcccagttggaatggtgttcattaacatTTTATTACTCCTTTCTCTTGTCACACAAtttcttcttatgaactcatattgccTATTAAACATAAtataacagagtataagtttacttacagttccatttaaaatgatttgttcagtcatatTAATCATAATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267377 lncRNA downstream 45702 20656201 ~ 20656503 (-) True G233917
TU267374 lncRNA downstream 47745 20654197 ~ 20654460 (-) True G233914
TU266935 lncRNA downstream 149755 20552215 ~ 20552450 (-) True G233514
TU266912 lncRNA downstream 168709 20529880 ~ 20533496 (-) True G233491
TU266895 lncRNA downstream 193840 20506750 ~ 20508365 (-) True G233479
TU267420 lncRNA upstream 20815 20729822 ~ 20730058 (-) True G233955
TU267422 lncRNA upstream 22971 20731978 ~ 20732335 (-) True G233957
TU267481 lncRNA upstream 114369 20823376 ~ 20829272 (-) True G234013
TU267544 lncRNA upstream 205140 20914147 ~ 20915906 (-) True G234069
TU267585 lncRNA upstream 275158 20984165 ~ 20984574 (-) True G234102
XR_005041383.1 mRNA downstream 50153 20648378 ~ 20652052 (-) False glipr2l
XM_021593053.2 mRNA downstream 50154 20648378 ~ 20652051 (-) False glipr2l
XR_002471931.2 mRNA downstream 106650 20590446 ~ 20595555 (-) False LOC110512925
XM_021593073.2 mRNA upstream 218947 20927954 ~ 20968368 (-) False si:dkey-12j5.1
XM_021593069.2 mRNA upstream 222806 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971660.1 mRNA upstream 222806 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971663.1 mRNA upstream 222806 20931813 ~ 20968368 (-) True si:dkey-12j5.1
XM_021593101.2 mRNA upstream 382780 21091787 ~ 21100107 (-) False LOC110513019
TU267325 other downstream 50509 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 150208 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 945587 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1053576 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1103104 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 469590 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 469590 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 736481 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 760654 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 789401 21498408 ~ 21498832 (-) True G234621

Expression Profile