RNA id: TU267544


Basic Information

Item Value
RNA id TU267544
length 1428
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G234069
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 20914147 ~ 20915906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCAGTCTTTGACTCTCTACGCCTCAGCAGGACAGATATATTTACATTACATTGTACACCAGATATATGGAAACATGTTATTACATTTCCCTGCATTccattttatgtgtgtgtgttgtcccagGGATGATAGTCTTTATGTTTAAGTTACGGTATTTCCAGCTTTTAATGTGATTGATGCCTTTTTGTACACATGCTTAACTAACCTGTATGAAACGGAGATGGCCCTTACTTTTTCTtgatctctatctctctttctctccctcttttctcacCTTTTGTTCTCTCACTAAATCTGtcaagcgctctctctctctctcccttacactttctcttctttctctctcgctctgctctttctctcaattcaattaaattcacttcaattcAAAGGGGATTTACGGGCATGGAAAACACATgtttatattgccaaagcaagtgaaaaacaataaacaaaagtgataTGAGCAATCAGGAATTAATAGTTAACATTACAAACACAAAAGTTTCAAAAGGAAAAAGACAtctcaaatgttatattattagCTAGgtatagtgttgtaacagtgtgcaAATAGTTGTAGTATGAATGGCAAGGGAAAATAAACAGATATAGTTTGTATTTACAAAGGTGTTTGTGcACAGCCCAATAAGGGCTCATGCGCCTGTCTGACATTGGTCTAGTTGTGTTTTATTTAATAAATCATTTTCAAAGTAACCCTACAAAAAGTCATTCATATACCTTTTTCATTTACACATGTACTAGGAAGATAAGTATTTGTTTACTGGGCTTCAATAATGTGACCGATCAAAGTCCCTCAGGCCTTGATAAATAATTAAACTGATTGAAATTAAGGGGATATTGGTGAGCAAGTGCCATGAGTGGAACTTACTTAGGTGTTCAAAAGTGCATGCCAGACCGAGAGCCTAACTCTTCTTACTTCTTCATGAGTTTTAGTTTAGAAAACGATCtcttcacagacagacagttacagGGATGGTTATAAACCGCTTGATTGCCGTAGCAACATCAGGGAAACTGTGAAGAATGGAGTGGTGCTTCAAATATAGCAGTTCTGCAATATCATTAATTGAGCCTCTCGCAGTCTCCTTAATTGTAGGCCTAGGAAGCGCTGGGACATGTTGTCTGTATACTGGACAGCCAGTAAATTGGCAGATGCAAACAGATATATCTTTAGTGGACAACAGTTCTTACGTTCTTGATTTTGTTCATGCTGGTGAACTGTCATTTGGGTTGTGGTTGCAATATTAACAGTCCCTTATCTCTTGGTATATATTGCTATGCACCATTCAAGACTAAGTTTAAATTGTGTGCAGCGCAATGGACAAATAATGCACAATGTCGCAGAAAAATCTGTATGGGTTGTCAATACTCAGTATAGAAAACAGTCGGACCTGTCCGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267481 lncRNA downstream 84875 20823376 ~ 20829272 (-) True G234013
TU267422 lncRNA downstream 181812 20731978 ~ 20732335 (-) True G233957
TU267420 lncRNA downstream 184089 20729822 ~ 20730058 (-) True G233955
TU267407 lncRNA downstream 205140 20702205 ~ 20709007 (-) True G233942
TU267377 lncRNA downstream 257644 20656201 ~ 20656503 (-) True G233917
TU267585 lncRNA upstream 68259 20984165 ~ 20984574 (-) True G234102
TU267661 lncRNA upstream 172679 21088585 ~ 21091208 (-) True G234166
TU267666 lncRNA upstream 184873 21100779 ~ 21101316 (-) True G234171
TU267668 lncRNA upstream 186995 21102901 ~ 21103148 (-) True G234173
TU267674 lncRNA upstream 195033 21110939 ~ 21111461 (-) True G234179
XR_005041383.1 mRNA downstream 262095 20648378 ~ 20652052 (-) False glipr2l
XM_021593053.2 mRNA downstream 262096 20648378 ~ 20652051 (-) False glipr2l
XR_002471931.2 mRNA downstream 318592 20590446 ~ 20595555 (-) False LOC110512925
XM_021593073.2 mRNA upstream 12048 20927954 ~ 20968368 (-) False si:dkey-12j5.1
XM_021593069.2 mRNA upstream 15907 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971660.1 mRNA upstream 15907 20931813 ~ 20968368 (-) False si:dkey-12j5.1
XM_036971663.1 mRNA upstream 15907 20931813 ~ 20968368 (-) True si:dkey-12j5.1
XM_021593101.2 mRNA upstream 175881 21091787 ~ 21100107 (-) False LOC110513019
TU267325 other downstream 262451 20648771 ~ 20651696 (-) True glipr2l
TU266934 other downstream 362150 20551783 ~ 20551997 (-) True G233513
TU266428 other downstream 1157529 19756204 ~ 19756618 (-) True G233052
TU266349 other downstream 1265518 19648086 ~ 19648629 (-) True G232980
TU266171 other downstream 1315046 19542102 ~ 19599101 (-) False rims2a
TU267728 other upstream 262691 21178597 ~ 21180682 (-) False G234224
TU267729 other upstream 262691 21178597 ~ 21180097 (-) True G234224
TU268086 other upstream 529582 21445488 ~ 21455716 (-) True LOC110513321
TU268159 other upstream 553755 21469661 ~ 21469945 (-) True G234600
TU268194 other upstream 582502 21498408 ~ 21498832 (-) True G234621

Expression Profile