RNA id: TU267262



Basic Information


Item Value
RNA id TU267262
length 394
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G233820
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21096997 ~ 21100178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTATTTGAATAGACGCTAACTATTTAAGACTGTGTGTTGTTGCAAAACGATCTCCCACACTCTTGGAACCCATCAACAGCACTCAGACTGAAGTCAACACCGTTCAAATCACACCTCTGTTGTAGCTCCGTATGAGACACTGCGTAAACGTCCCCACCTCACTCGTTCCAATAGGAAAAAGGCGAAGTAGGTTTTGCCTGCACTGACACCAAAGTCCCAAACTGTCCGAGTGAGCTGCCGACACTGATGTCCAGTCTCAAACTGGTTTCATGGCAAGCCGCTTTTCCTTCCTCCCTCGATGTCGGTATAAATCACTCGTGTCGAACACCTGCTGCTCGCGTAACAACTGTCCACTTGGGCGCACACTCTGCTAGCCACCGGGGGGCTATTTCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU267192 lncRNA upstream 132842 20963756 ~ 20964155 (+) True G233753
TU267194 lncRNA upstream 164270 20927898 ~ 20932727 (+) False G233754
TU267193 lncRNA upstream 164270 20928247 ~ 20932727 (+) True G233754
TU267121 lncRNA upstream 181182 20913154 ~ 20915815 (+) True G233687
TU267077 lncRNA upstream 318472 20774895 ~ 20778525 (+) True G233644
TU267266 lncRNA downstream 7307 21107485 ~ 21107689 (+) True G233824
TU267272 lncRNA downstream 10861 21111039 ~ 21111260 (+) True G233830
TU267284 lncRNA downstream 32135 21132313 ~ 21132544 (+) True G233840
TU267319 lncRNA downstream 67447 21167625 ~ 21167864 (+) True G233869
TU267302 lncRNA downstream 69106 21169284 ~ 21169783 (+) True LOC118946533
XM_036971671.1 mRNA upstream 5705 21026137 ~ 21091292 (+) True itga8
XM_021593061.2 mRNA upstream 74640 20968444 ~ 21022357 (+) False mindy3
XM_021593064.2 mRNA upstream 74640 20970765 ~ 21022357 (+) True mindy3
XM_036971631.1 mRNA upstream 185584 20846997 ~ 20911413 (+) False LOC118946512
XM_036971627.1 mRNA upstream 185584 20846998 ~ 20911413 (+) True LOC118946512
XM_036971736.1 mRNA downstream 56998 21157176 ~ 21164038 (+) False LOC110513109
XM_036971743.1 mRNA downstream 56998 21157176 ~ 21164038 (+) True LOC110513109
XR_005041413.1 mRNA downstream 66372 21166550 ~ 21169290 (+) False LOC118946533
XM_036964655.1 mRNA downstream 139857 21240035 ~ 21263153 (+) False dcst2
XM_021593175.2 mRNA downstream 165240 21265418 ~ 21269804 (+) False LOC110513224
TU266973 other upstream 488272 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 531285 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1252345 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 1862702 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 2245015 18851249 ~ 18851982 (+) True G231438
TU267841 other downstream 163897 21264075 ~ 21264506 (+) True G234322
TU267870 other downstream 186548 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 917416 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 958364 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 958501 22058679 ~ 22068080 (+) False LOC110503910

Expression Profile