RNA id: TU267841



Basic Information


Item Value
RNA id TU267841
length 316
RNA type TUCP
GC content 0.32
exon number 2
gene id G234322
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21264075 ~ 21264506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCCTAACTTCCCCCCACATCACCCACAGGGGCACCAGGAgactgatgaagaggaggatctCCATGGCAACCCGGCGGCGGCCCTCAGAGAGCAGGGTGCAGCGTGGGGCCTACAGCAGTATAGGGCTGGTGGAAGGAGACAGTGGGGACAGTAGTGGTCATATCAGTCCCCCCAGTGATTCTGAACACAGTGAGCCAGATATGATTTACCAAGACTACTCAGAACAGGACCACTCTGAGCCTAGTGACGATGACTATAACCACAACCCCAACCCAACATTGTCCCTCTCGGCCATCTATGTGAGCAGGGGGCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU267838 lncRNA upstream 1323 21262388 ~ 21262752 (+) True dcst2
TU267836 lncRNA upstream 2849 21260805 ~ 21261226 (+) True G234317
TU267827 lncRNA upstream 8138 21255668 ~ 21255937 (+) True G234308
TU267818 lncRNA upstream 16420 21247363 ~ 21247655 (+) True G234299
TU267763 lncRNA upstream 30216 21232173 ~ 21233859 (+) True G234253
TU267874 lncRNA downstream 28882 21293388 ~ 21293794 (+) True G234344
TU267875 lncRNA downstream 29525 21294031 ~ 21294393 (+) True G234345
TU267883 lncRNA downstream 39815 21304321 ~ 21304548 (+) True G234353
TU267885 lncRNA downstream 44338 21308844 ~ 21312450 (+) True G234355
TU267891 lncRNA downstream 55715 21320221 ~ 21322836 (+) False G234360
XM_036964655.1 mRNA upstream 922 21240035 ~ 21263153 (+) False dcst2
XR_005041413.1 mRNA upstream 94785 21166550 ~ 21169290 (+) False LOC118946533
XM_036971736.1 mRNA upstream 100037 21157176 ~ 21164038 (+) False LOC110513109
XM_036971743.1 mRNA upstream 100037 21157176 ~ 21164038 (+) True LOC110513109
XM_036971671.1 mRNA upstream 172783 21026137 ~ 21091292 (+) True itga8
XM_021593175.2 mRNA downstream 912 21265418 ~ 21269804 (+) False LOC110513224
XM_021593169.2 mRNA downstream 943 21265449 ~ 21269804 (+) True LOC110513224
XM_021593181.2 mRNA downstream 6010 21270516 ~ 21281833 (+) False trim33l
XM_036971837.1 mRNA downstream 6010 21270516 ~ 21281833 (+) True trim33l
XM_021593188.2 mRNA downstream 18991 21283497 ~ 21285741 (+) True zgc:171704
TU266973 other upstream 655350 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 698363 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1419423 19827130 ~ 19844652 (+) True LOC110512505
TU265246 other upstream 2029780 19226366 ~ 19234295 (+) True G231983
TU264626 other upstream 2412093 18851249 ~ 18851982 (+) True G231438
TU267870 other downstream 22220 21286726 ~ 21287002 (+) True G234340
TU268500 other downstream 753088 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 794036 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 794173 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 1039987 22304493 ~ 22304906 (+) True G235426

Expression Profile