RNA id: TU268178



Basic Information


Item Value
RNA id TU268178
length 214
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G234610
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21484384 ~ 21484597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATAAATCCTAAATCAGTAAAAAACAAATAatcaagctagctaactagcagatttacatcaatcatcaacgatcagctgatcATCTTTTCCCAATGTCAATCATGTCTTTAggaggcactgtaactagctTGCTTTCAATTTGTGATGAGTTAGTGTGTTGTTGcaaaaataaataggcctatgctAAGAGGCATTTATTAGGCTATGTTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268160 lncRNA downstream 11840 21471366 ~ 21472544 (-) True G234601
TU268145 lncRNA downstream 51095 21432988 ~ 21433289 (-) True G234586
TU268143 lncRNA downstream 53203 21430968 ~ 21431181 (-) True G234584
TU268140 lncRNA downstream 56010 21428109 ~ 21428374 (-) True G234581
TU268103 lncRNA downstream 95618 21375827 ~ 21388766 (-) True LOC110513307
TU268181 lncRNA upstream 3496 21488093 ~ 21488380 (-) True G234613
TU268185 lncRNA upstream 8627 21493224 ~ 21493785 (-) True G234617
TU268187 lncRNA upstream 12233 21496830 ~ 21497139 (-) True G234619
TU268188 lncRNA upstream 12871 21497468 ~ 21497764 (-) True G234620
TU268197 lncRNA upstream 16053 21500650 ~ 21500931 (-) True G234623
LOC110503879 mRNA downstream 15157 21457830 ~ 21469227 (-) True LOC110503879
XM_021593243.2 mRNA downstream 28412 21438546 ~ 21455972 (-) False LOC110513321
XM_021593235.2 mRNA downstream 28771 21438546 ~ 21455613 (-) False LOC110513321
XM_021593226.2 mRNA downstream 28772 21438546 ~ 21455612 (-) False LOC110513321
XM_036971866.1 mRNA upstream 29941 21514538 ~ 21539187 (-) True LOC110503882
XM_021593273.2 mRNA upstream 66821 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA upstream 66821 21551418 ~ 21587320 (-) True LOC110513430
XM_021593285.2 mRNA upstream 104344 21588941 ~ 21609130 (-) False LOC110513449
XR_002471999.2 mRNA upstream 127557 21612154 ~ 21619661 (-) True LOC110513497
TU268159 other downstream 14439 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 28668 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 303702 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 304287 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 832688 20648771 ~ 20651696 (-) True glipr2l
TU268194 other upstream 13811 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 254248 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 259854 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 1089236 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1672512 23157109 ~ 23189031 (-) True G237047

Expression Profile