RNA id: TU268187



Basic Information


Item Value
RNA id TU268187
length 310
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G234619
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21496830 ~ 21497139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAGAGACCTGGGCGACATATTAATGTCCCTTCTTCTATAGCACCAGCACATGGCCAGGTCGGCCCGGAATGAAGGCATGTAGAAGCCATAGATGACCGGGTCAAAACATGTGTTCAGGTTGCCGAAGACAAACAGGGCGTGGTGGATGTATTCAGGCGTGACCTGCAGCATCTCCGGCTGGAACCAGTACCAGATACCCAGGAGGTAGTAGGGTGTCCAGCAGACCACGAAGGACATCACGATGATGATGGTCATCTTTAGAGTCTTCATTCGTGCTTTGGGGATCATGTTTGTGCCACTGCGTCTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268185 lncRNA downstream 3045 21493224 ~ 21493785 (-) True G234617
TU268181 lncRNA downstream 8450 21488093 ~ 21488380 (-) True G234613
TU268178 lncRNA downstream 12233 21484384 ~ 21484597 (-) True G234610
TU268160 lncRNA downstream 24286 21471366 ~ 21472544 (-) True G234601
TU268145 lncRNA downstream 63541 21432988 ~ 21433289 (-) True G234586
TU268188 lncRNA upstream 329 21497468 ~ 21497764 (-) True G234620
TU268197 lncRNA upstream 3511 21500650 ~ 21500931 (-) True G234623
TU268652 lncRNA upstream 90311 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA upstream 90311 21587450 ~ 21588572 (-) False LOC110513449
TU268651 lncRNA upstream 91575 21588714 ~ 21590826 (-) True LOC110513449
LOC110503879 mRNA downstream 27603 21457830 ~ 21469227 (-) True LOC110503879
XM_021593243.2 mRNA downstream 40858 21438546 ~ 21455972 (-) False LOC110513321
XM_021593235.2 mRNA downstream 41217 21438546 ~ 21455613 (-) False LOC110513321
XM_021593226.2 mRNA downstream 41218 21438546 ~ 21455612 (-) False LOC110513321
XM_036971866.1 mRNA upstream 17399 21514538 ~ 21539187 (-) True LOC110503882
XM_021593273.2 mRNA upstream 54279 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA upstream 54279 21551418 ~ 21587320 (-) True LOC110513430
XM_021593285.2 mRNA upstream 91802 21588941 ~ 21609130 (-) False LOC110513449
XR_002471999.2 mRNA upstream 115015 21612154 ~ 21619661 (-) True LOC110513497
TU268159 other downstream 26885 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 41114 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 316148 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 316733 21178597 ~ 21180097 (-) True G234224
TU267325 other downstream 845134 20648771 ~ 20651696 (-) True glipr2l
TU268194 other upstream 1269 21498408 ~ 21498832 (-) True G234621
TU268723 other upstream 241706 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 247312 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 1076694 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1659970 23157109 ~ 23189031 (-) True G237047

Expression Profile