RNA id: TU268197



Basic Information


Item Value
RNA id TU268197
length 282
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G234623
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21500650 ~ 21500931 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTGCCTCAAGCCTCAGAGCATACCGTAGCTACAGGAGAATGATCAGGAGAACTGATTTGTATAGCGTATTGACTATGGCTTAGCCCACTACTTGTGACCCTACTAACAAGTATCTTCTTGGCCCTTTAGCACAATGGTACGATTAATGGGCTTGATGCATTATGGATTCCACATGTCTGCACTCTGCTGCcatatacaccgagtgtacaaaaccctgctctttccatgacatagactgaccaggtgaatcaaggtgaaagatatgatcccttattgatgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268188 lncRNA downstream 2886 21497468 ~ 21497764 (-) True G234620
TU268187 lncRNA downstream 3511 21496830 ~ 21497139 (-) True G234619
TU268185 lncRNA downstream 6865 21493224 ~ 21493785 (-) True G234617
TU268181 lncRNA downstream 12270 21488093 ~ 21488380 (-) True G234613
TU268178 lncRNA downstream 16053 21484384 ~ 21484597 (-) True G234610
TU268652 lncRNA upstream 86519 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA upstream 86519 21587450 ~ 21588572 (-) False LOC110513449
TU268651 lncRNA upstream 87783 21588714 ~ 21590826 (-) True LOC110513449
TU268681 lncRNA upstream 131351 21632282 ~ 21632789 (-) True G235052
TU268779 lncRNA upstream 287116 21788047 ~ 21789380 (-) True G235145
LOC110503879 mRNA downstream 31423 21457830 ~ 21469227 (-) True LOC110503879
XM_021593243.2 mRNA downstream 44678 21438546 ~ 21455972 (-) False LOC110513321
XM_021593235.2 mRNA downstream 45037 21438546 ~ 21455613 (-) False LOC110513321
XM_021593226.2 mRNA downstream 45038 21438546 ~ 21455612 (-) False LOC110513321
XM_036971866.1 mRNA upstream 13607 21514538 ~ 21539187 (-) True LOC110503882
XM_021593273.2 mRNA upstream 50487 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA upstream 50487 21551418 ~ 21587320 (-) True LOC110513430
XM_021593285.2 mRNA upstream 88010 21588941 ~ 21609130 (-) False LOC110513449
XR_002471999.2 mRNA upstream 111223 21612154 ~ 21619661 (-) True LOC110513497
TU268194 other downstream 1818 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 30705 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 44934 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 319968 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 320553 21178597 ~ 21180097 (-) True G234224
TU268723 other upstream 237914 21738845 ~ 21743411 (-) True G235092
TU268720 other upstream 243520 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 1072902 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1656178 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 2270593 23771524 ~ 23780135 (-) True LOC110514600

Expression Profile