RNA id: TU268229


Basic Information

Item Value
RNA id TU268229
length 3082
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G234654
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21551421 ~ 21554541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGAATCTGTTTGTATTTTCCTTCTATAAAACAAGACATTTACAACTGAAGTCACATCCATATAAATTACAACAGCAAACACAATATATTTTAAATACAGATATCCTCTCTTAATTTCTTTGCTCACTTGACCAATAAAGGAACAGACAATATAAATGTCCCTTATATTCACTTGCAGTCCGGTGCATTGAAATAGTGGCCATAAATGTAATATTGCCTACGTTGGGGAACAAATCTACCTACCTTATTTTTACAATCTAACTTCGGGCTGGGAAATCTCAAAATATACACCATTTTATCAACCTACTATCCATACagttcactacctttgaccaAGAGCCAAATAGGGTGTAATTAGAGACGCTGACGATAACTCAAGTCTTAACTTTTAAACAGCATTCCCTCTTGGGTCTCCTTTACATCATGACCACTGATAGGCAATTTGAATAAACAGGTTCCCACCATGTTATTACTAAAGACGTGTCAATTCCAAGACCAGGGTTGCCTTAGCATGATCAAGCCCAATTCACCCTACCAATGGCTAGAACTGGACTCTGCATGCCCTACTGCCCTCTACTGGCTGAGAATACTCAATGCTTTGCTCCAGTCTGTATATCCCTGTTGACTGGATGGCTGTGTGCAAACAATGTCTCCCTTGTACTTTAATGATATATGGGTAGACTCACAATGATATCAGTGCCATCTGAAATATATCTCACCCTCAGGACTAAAATATGAGATCTGAAAATTGTTCTCGCTACAACTTCACATCCCTAGTTGTAAATACAGCTTTACTCCCCAGGTGGGGACAATAATTTCTGTCACTCACACAATCTTCAAAGGCAGAACACAAGGCGTTCTCTCGTGACGCTGCTATATAACACTGCAAGATCAAAAACAAGGTATGACGGTAACAGAGGCATTTAACAGTGTGGCAACATCATATGAAATTGAAAGAAAATGAAAAGTCCATTGTGCAATTCATTTGTTTTCATATACAAAGTCGAACAACAAATAAAGTGTTCAAATAAGAGGGGAAAAGGCCTCACAGGTACTGTACATGAAAACAAGAACCTAGTAGGTAAGTATGTGCTCCACAGTGAAGTACCTTCCTCTCCTTAAACACTTCCACTCAACTGGATCTTCTAAAGTTCTTTGATCTCTGCCAAAAATTCTTAACCCACTACTGGCCTAAATGTGTGGTGAATGAAAAACTGGTGATGTGTGACTCAAGTTCCATCACATTCTACTACTACTAAAGGTCCATCACAGTCATTTCCTTGTGGACCATCCTCCCAGACAAATCACTCCCGTTTAACACGGGAAAAGAGGTATGAGATGAGGTAAATACGCATAAAACATGAGAACACACGTTTTTCTTTTATTCTTCTGTCAGCCACTTTCTGAGAATCAGTTCTTGAACTGAGAACCCCCAATCACACTTCAAATTCACAAGAACAGTACAGGGAATTAAAAACACAATACAACTGATAAATCCTGTATGCAATAtgtatgtgtgtccatgtatgaaAAGTCCTTCCTGGTTGTGATGTAGGGGCGCAGGACTGGGGTTTTATAGGACTCGTGGATTCTCCTTGACTGTCAGTGTCTGTTCCCAGTCACACCCCCTCCACTTCCTGCCTAACCTAATGTTGCAGGCATAGAAAGATGCCTGAGCAGAGTTCCCACTTCCGTCAGGTTgaaaatactgtatccctgaCAACCGGATGTTAGCATTTCTGGCGACTCTGCATAGGCTATTTCATGCCATACCCAAAGTTTGACCATAGCTCCATTCCACACCATGagctggaaaacacacacactaaggaAACCATATAGTGATAGTGATCAAACCATTACATTGCTGATCCCCACAGCTCACCATCTGCTCCCAAAACCGATAGTTAACATCATACTCTCCCAAAATCAATAGGAAACATCATCCTTTCCCAGTCAACATCCTCCTTTACCAGAGTTGACATCATCTCCCAGATTTGACATCATCCTTTCCGAGAGTTGACATCATCCTTTCCCAGTCAACATCATCCTTTCTTAGTTGACATAATTCTCTCCCAGATTCGACATCTGAGCTGACATAATCCTCCCGAAGATATCCTCACCCGAAGTCGATATTCAATATCATCCTCTCCCAGAGTAAACATCCTCGTTTGGATTGACTTGCTGAAGCAGTGTCCAGTTGACAGAATTCATTCCAGAGGGTGAAAAAGAGCAAGAGAGGCATGAAATGCGATCTAATCTAAAGGTTTTGACTGTGACTGAGTGATTGGTATGTACCCTTGCAATGTAATGTATGTTACAGTTCGATGATAGACACTTCCCATCACATCAAGGATCACTAGACATCTCCCACTCATGAGATTTTCTGTCTGAAAGCAATGCAAATTATAGAATATATTCACATTGAATGCATAGATCGCAGGTCGGTAATATGCCTTACATGTTGCATACGAATGAAATGCATGGTTTATGACCTACAAACCAGTATGAGTTATATTGGTGAGGCAGAGGCCATGTATATATGAGCAATGAGCAAAGTCCAAGGGGGCTGGGCTGTATGTACCAGGTCCAATAATCCCTGTAGCCAAACTATAGGACGAGAGGGTTGTTAGTTATTGAGGAAGCTGTCCAAAGGCCAGTTGCACAATGGAAATTAATGAAGGTCAAATGTAGATATCGGGTTCACATAAACAAGGATAGTGAGGTGTGGTTACACAGTCAGGGGGCTTTTATAGTGTGGCCAAGCTGTGCTAGGTGGCAGCACAATGGAGAAGTCCAAAGTGAAGGCAGAATTATCTGTCTGTTGTTTTTGGTCTAACTTCTCCAATCCCTTCTTCTTGGCAGCTGGGTATCAGTGTTCTAGGGAGTGGAGGCAGCAGCGATGGGGGCGGATCTGGATTGGAGTGGGTGGAGCCTGCAGGTGGTATTAGCACTCGAGGGGCAGAAGGAAGCTCCGTCTGCAGTCCACAGCCTTGGGGCTAGGTGGCTGGGCTCGCTTCCTGCGGAGCTCCTCGCGGCCCAAGGAGCCACTCAGCCGTTGGTACGCAGCCTTGTATTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268038 lncRNA upstream 49508 21501342 ~ 21501913 (+) True G234500
TU268042 lncRNA upstream 53519 21497532 ~ 21497902 (+) True G234504
TU268035 lncRNA upstream 65231 21485989 ~ 21486190 (+) True G234497
TU268034 lncRNA upstream 65528 21485664 ~ 21485893 (+) True G234496
TU268030 lncRNA upstream 67949 21481293 ~ 21483472 (+) True LOC110513388
TU268254 lncRNA downstream 32902 21587443 ~ 21587802 (+) True G234677
TU268365 lncRNA downstream 206596 21761137 ~ 21761338 (+) True G234775
TU268390 lncRNA downstream 249342 21803883 ~ 21804116 (+) True G234799
TU268403 lncRNA downstream 311252 21865793 ~ 21867110 (+) True G234812
TU268404 lncRNA downstream 313243 21867784 ~ 21868301 (+) True G234813
XM_036964154.1 mRNA upstream 54147 21493159 ~ 21497274 (+) True LOC110513414
XM_021593244.2 mRNA upstream 67905 21472944 ~ 21483516 (+) False LOC110513388
XM_021593253.2 mRNA upstream 71438 21472944 ~ 21479983 (+) False LOC110513388
XM_021593210.2 mRNA upstream 144224 21390417 ~ 21407197 (+) False LOC110513285
XM_021593290.2 mRNA downstream 65184 21619725 ~ 21624474 (+) False LOC110513472
XM_021593293.2 mRNA downstream 65184 21619725 ~ 21624474 (+) False LOC110513472
XM_021593298.2 mRNA downstream 65184 21619725 ~ 21624474 (+) True LOC110513472
XM_036971923.1 mRNA downstream 77799 21632340 ~ 21643258 (+) True LOC110513504
XM_036971924.1 mRNA downstream 94900 21649441 ~ 21713248 (+) True LOC100136306
TU267870 other upstream 264419 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 286915 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 942696 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 985709 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1706769 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 463053 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 504001 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 504138 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 749952 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 905999 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile