RNA id: TU268254



Basic Information


Item Value
RNA id TU268254
length 360
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G234677
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21587443 ~ 21587802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCTTTATTTTTTGTAAAATAATGTGAAAGGTACAAATATTTTCTTGTTAGGTTTAAGATGCACAGTGGTTTAGGAACATTATTTACAACATCGATGGGTTCCCTGGATATTACAAgtttaaaataaacatttaaaatgtaattaCTCTGAAAACGCAAAATACATGTGGTTTTGACCCTAAACATGAAGCAAAAACGTTAACTACAACCGTAGAATTCACTGAACAATAACACATCAATTAATATGGCCATCTGACTGATCCCTATCACACATAGCTTCACTGTACAACAGCAACCCCTACTGGCAATGTTATTGCCGTGCATGGTCTTCAACTACAACGTTACTGCATAACACAGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268229 lncRNA upstream 32902 21551421 ~ 21554541 (+) True G234654
TU268038 lncRNA upstream 85530 21501342 ~ 21501913 (+) True G234500
TU268042 lncRNA upstream 89541 21497532 ~ 21497902 (+) True G234504
TU268035 lncRNA upstream 101253 21485989 ~ 21486190 (+) True G234497
TU268034 lncRNA upstream 101550 21485664 ~ 21485893 (+) True G234496
TU268365 lncRNA downstream 173335 21761137 ~ 21761338 (+) True G234775
TU268390 lncRNA downstream 216081 21803883 ~ 21804116 (+) True G234799
TU268403 lncRNA downstream 277991 21865793 ~ 21867110 (+) True G234812
TU268404 lncRNA downstream 279982 21867784 ~ 21868301 (+) True G234813
TU268408 lncRNA downstream 293249 21881051 ~ 21882985 (+) True G234817
XM_036964154.1 mRNA upstream 90169 21493159 ~ 21497274 (+) True LOC110513414
XM_021593244.2 mRNA upstream 103927 21472944 ~ 21483516 (+) False LOC110513388
XM_021593253.2 mRNA upstream 107460 21472944 ~ 21479983 (+) False LOC110513388
XM_021593210.2 mRNA upstream 180246 21390417 ~ 21407197 (+) False LOC110513285
XM_021593290.2 mRNA downstream 31923 21619725 ~ 21624474 (+) False LOC110513472
XM_021593293.2 mRNA downstream 31923 21619725 ~ 21624474 (+) False LOC110513472
XM_021593298.2 mRNA downstream 31923 21619725 ~ 21624474 (+) True LOC110513472
XM_036971923.1 mRNA downstream 44538 21632340 ~ 21643258 (+) True LOC110513504
XM_036971924.1 mRNA downstream 61639 21649441 ~ 21713248 (+) True LOC100136306
TU267870 other upstream 300441 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 322937 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 978718 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1021731 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 1742791 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 429792 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 470740 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 470877 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 716691 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 872738 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile