RNA id: TU268723


Basic Information

Item Value
RNA id TU268723
length 1405
RNA type TUCP
GC content 0.41
exon number 12
gene id G235092
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21738845 ~ 21743411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGCACGCGAATGGTGGAGGCTCCACAGTTTTGGATGAGTGTACGGGGGATAACCTCCAGGGCCTGGGCCACGGCACGGTAGGGCCACTGCTCCACCCCGGTCAGGGTCTTGGAACGCTCCATCAGCCTCTTGGACACAGCCATCTCCACCGCCCCGCCTCCAGGGAGTAGAGATGGGTCCAGTAGCACATTACGACACACCTGCATGGCATCCTGCAAGTTACGCTCCACCtcAGCCAGTATCTCTTTGCTGGCTCCTCTCAGCAGGATGGTGCAGGCTTTGGGGTCTTTGCACTCTGTGACGAAGGTGAAGTACTCATCTCCAATCTTCTTGATCTCAAACAGGCCGGCGCCGGTTCCCACGTCCTCCTCACGCAGCTCGTCTGTACGGCTGGCAATGCGAGCCCCACATGCCCTTGAAATGCGGTTGTTGTCAGTCTTTCTGACACGGCGGATGGCTGTGATGTTGGCCTTCATCAGATAGTGTTGTGCCAGGTCTGAGATGCCCTTCTCAGTGAAGATGAGGTCTGGCTTGAGGCGGATGATGTCTTCACAGATCGTCTGGATATACTCTTCCTCCATCTGAAGGATCCTGGAAAAGTCTTCCTCACGTGTGATCTCAATGTCAGTCTGGCTCTCGCCCTTCTTGTACTCCAGGGAGCAGTCCAGCAGGATGATGCGGGGGTTCTTGATCATTCTGCGCATGCGGGGGTGAGTGACGTCCTTGTTGACCATCACGCCTTTTAGCACACATGAGTCCTCAATGAAGCCACCAGGCACCTTCTCCACTTTGGCGTACAGCTTAATGTTGATTTCCTTGCGTCCGTGCTCCTCCAACTCCACAGTGCGCACGGCGTCCAGGGCAATATTACACGCCATGGTAGACCAACGACTCAAGGCCTTGGTGCAGATGGCAGAGTTGATGATCTTCAGCATCTGTGCCCTGTCATTCACATCCACCGGGGTGCTGATGTCTTTGAGCATGTCGAGCATGTCGTCCAGGGCGTGTCTGTAGGCACTAATGATGACTGTGGGGTGCATCTGCTGCTCCAAGAACTGCTCTGCTACAGACAGCATCTCTCCAGCGAGAATGATGACTGACGTGGTGCCGTCTCCCACCTCCTCATCCTGGGTGCGGCTGATCTCAATCATGGACTTGGCTGCCGGGTGCTGCACTTGGATCTCTCGGAGGATGGCATTGCCATCGTTGGTCATGACAATGCCGCCCATGGGGTCTAGCAGCATCTTCATCATGGCTCTTGGTCCCAGgcatgttctgatgacatctgCTATTGCCTTTGCGGCACTGATGTTCCCTTTCTGAACCTTGCGTCCAGACTCCCTTTTCATATTCTGGCTCAACACGACGATTGGTCTTCCCATCATTTTGGCAGCGTGCGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268681 lncRNA downstream 106056 21632282 ~ 21632789 (-) True G235052
TU268651 lncRNA downstream 148019 21588714 ~ 21590826 (-) True LOC110513449
TU268652 lncRNA downstream 149211 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA downstream 150273 21587450 ~ 21588572 (-) False LOC110513449
TU268197 lncRNA downstream 237914 21500650 ~ 21500931 (-) True G234623
TU268779 lncRNA upstream 44636 21788047 ~ 21789380 (-) True G235145
TU268801 lncRNA upstream 62119 21805530 ~ 21805751 (-) True G235165
TU268793 lncRNA upstream 139828 21883239 ~ 21919236 (-) True G235157
TU268790 lncRNA upstream 141375 21884786 ~ 21891946 (-) True pmvk
TU268842 lncRNA upstream 144680 21888091 ~ 21889440 (-) True G235200
XM_036964163.1 mRNA downstream 20514 21716853 ~ 21718331 (-) True LOC118944502
XR_002471999.2 mRNA downstream 119184 21612154 ~ 21619661 (-) True LOC110513497
XM_021593285.2 mRNA downstream 129715 21588941 ~ 21609130 (-) False LOC110513449
XM_021593273.2 mRNA downstream 151525 21551418 ~ 21587320 (-) False LOC110513430
XM_021593278.2 mRNA downstream 151525 21551418 ~ 21587320 (-) True LOC110513430
XM_036971926.1 mRNA upstream 1014 21744425 ~ 21755710 (-) False LOC118946878
XM_021593347.2 mRNA upstream 13246 21756657 ~ 21760649 (-) False LOC110513558
XM_021593341.2 mRNA upstream 13246 21756657 ~ 21760819 (-) False LOC110513558
XM_021593354.2 mRNA upstream 13246 21756657 ~ 21760819 (-) False LOC110513558
XM_036971925.1 mRNA upstream 13246 21756657 ~ 21760819 (-) True LOC110513558
TU268194 other downstream 240013 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 268900 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 283129 21445488 ~ 21455716 (-) True LOC110513321
TU267728 other downstream 558163 21178597 ~ 21180682 (-) False G234224
TU267729 other downstream 558748 21178597 ~ 21180097 (-) True G234224
TU268720 other upstream 1040 21744451 ~ 21755501 (-) True LOC118946878
TU269608 other upstream 830422 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1413698 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 2028113 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2437145 24180556 ~ 24183554 (-) False G237657

Expression Profile