RNA id: TU268408


Basic Information

Item Value
RNA id TU268408
length 1720
lncRNA type intronic
GC content 0.39
exon number 2
gene id G234817
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21881051 ~ 21882985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGCTAGTATGCCTTTAAAAATATTTCTTGTTCAAGCCAGCCAAGATTTCATGGAGGGTCTCTTTCCACTTTAATAAAAAAAAGTTTAGCCAACATAGGTCGGTAATTTACTAGCCAAAGGTTGTGATGAATACCAAATAAAGCTATGTGTTGAGAACTAGGCAACGATAGCCAAACTAGTATATCAACCAATATACTGTGAATTCCAGTCATATAACTATAACACTTGCTGTCCCATGCAGGCAGTACAAAACGTGTTCATAGCAAGCAAAATTAAACCCCACTACTGTTGTACTTTCTTACTCTAGCGCTTTGACTTGTTTCCTTACTAGCACGGACCTGATGGCTGCTTTGAGGAATGTTTTTACTGACGTGGTTGTCTTACTTCACTACCTTAAGTTGACAAGTCTGAATACTGTATTGCtttcctgtctggtctacccaagaaagccattggtcaactgcaaaacatacagaatactgcagcacgggtactgaccaagaccagatggAGAGCACACATTACCCCGGTTTTAAGGTCTttgcactggctgcctgtgagttttggAATACATTTTTAAGATTCTATTGTTTGTAAATCAATCTGCaattgtgcaccccaatacatgtcagacatgcttttaagttatgtacccagtaggtccctcaggtcctctggcactggcctttttTAATTAtaccaaagcctaggaccaagaggcatgaaGAGACGGCCtctagttattatgcccccagcctttggaatagcctgccagagaaacTGTGGATGTATCTAATATCTGCTGTAAAATATTCAGTACTGAGAGAGTCTTGGTCATTTcgtcaaacaatcatctttaatttaatatctatttaattattGCAGTGAGACCGTCAGCCCACCAGTCTTAACCGACTGTTAGGCTGAGAGTCTAGCCTTTACAGATGTTGCAGTTTTTTTTAGCTGATACCAAGATTGCTTAGTCAGTCACTTCTAACCTTCCCATAAGCCACCTTGGTTATCTACACAGGATGGTATTTTACTGTCTCATCTTCCTGGCATCTGAGAAACTGAGGCATTGTTAACTCTTCCAGGCTCTCTCTCGCgtaaatatttcagcttttatatatatttttttctgtaaAGCACATTGCGTTGCATTCCAAGTCTGAAATGGGCTGAAGTAAATACTTGAAGTTGAATGTAAGTCGCTGTGGATAAAGGTGTCTGCTAAAGGCCTAAATTGTAAATGTAGCTGACAGGTCAGACCTTTTTAATGAAATGTTCTAATGTTAGTGTGAGTAGATCTCGTTTTCTGCCATGATCTCGCTCTGTCAGAGCTAAATAAGGCCATGCAGTAGCTCGGGCTGTGTTCGTTTTCAAGGTGACTTATACTGTAGTTAAATAGGGAATTATTTTCTGGTGATACCAAACCTCCATAATGCATAGCATACAACACGGCTCTCTTTGCTCTATGGAGACCTTGTGAATTATGAAGCTATGTCATAGAATTTACCTTAGTCACCCCGGGTTTTGTTTTACAGATTAAGGCTTACATATTTTGTTCTATCACTATATAGAGAAGTTGTTTTCAAATGTTATGGTTTGGTCTAAGTTCCCCTTTTGAGGTACTGCTAGAATTACCAGGAAGTACTTTCTGATATTTGTTGACCCCTGGTATTAAGGGGGATCTCCAACTTCAACATCTGACCAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268404 lncRNA upstream 12750 21867784 ~ 21868301 (+) True G234813
TU268403 lncRNA upstream 13941 21865793 ~ 21867110 (+) True G234812
TU268390 lncRNA upstream 76935 21803883 ~ 21804116 (+) True G234799
TU268365 lncRNA upstream 119713 21761137 ~ 21761338 (+) True G234775
TU268254 lncRNA upstream 293249 21587443 ~ 21587802 (+) True G234677
TU268414 lncRNA downstream 17297 21900282 ~ 21900839 (+) True G234822
TU268416 lncRNA downstream 19507 21902492 ~ 21906182 (+) True G234823
TU268427 lncRNA downstream 44914 21927899 ~ 21928166 (+) True G234834
TU268436 lncRNA downstream 58078 21941063 ~ 21941718 (+) True G234843
TU268437 lncRNA downstream 58902 21941887 ~ 21942100 (+) True G234844
XM_021593420.2 mRNA upstream 4959 21857318 ~ 21876092 (+) False LOC110513633
XM_021593428.2 mRNA upstream 4959 21857318 ~ 21876092 (+) False LOC110513633
XM_021593457.2 mRNA upstream 6426 21863444 ~ 21874625 (+) False LOC110513633
XM_021593450.2 mRNA upstream 6426 21863445 ~ 21874625 (+) False LOC110513633
XM_021593387.2 mRNA upstream 25896 21846132 ~ 21855155 (+) True LOC110513614
LOC110513748 mRNA downstream 6028 21889013 ~ 21893991 (+) True LOC110513748
XR_005039841.1 mRNA downstream 127945 22010930 ~ 22012458 (+) False LOC118944503
XM_021593480.2 mRNA downstream 134594 22017579 ~ 22037490 (+) False kiaa0319
XM_021593489.2 mRNA downstream 134594 22017579 ~ 22037490 (+) False kiaa0319
XM_021593485.2 mRNA downstream 135013 22017998 ~ 22037490 (+) False kiaa0319
TU267870 other upstream 594049 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 616545 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 1272326 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1315339 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 2036399 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 134609 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 175557 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 175694 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 421508 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 577555 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile