RNA id: TU268793


Basic Information

Item Value
RNA id TU268793
length 1710
lncRNA type read_through
GC content 0.43
exon number 2
gene id G235157
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21883239 ~ 21919236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACTGAAAACACCTTTTGATTTACTCTATGGGGAGAGAGCACATTGGGGAGTTGATTATGGAAAATCGCCGCATTTACCATCAAATTAAGTGCCCATTTACAACTGCCCAATCAATGCCCAGTGAGAAAACACCATTGAAGTGCAATTTGAAGTAGGATTGGAGTTATTAGCATATCTGACACCACCTTATGCAGAGAGATGCCAAAGATGGTTTCCACATTTAGCATGGGCATCATCAACAGACAGATCAATACAGAGATCAATGATTGGTTTTGACTGCATAGTGCATGCAGTGTGTAGATTGGCTCAGGGTCCTCTTACTTAGAAATACCATTGAATTCAATCAAACATGCACTTTAACATTTGCAGAAAAAAAAAGTTGCCTATACTGATAAGTTTAGATAATACCCTTGTGTCCCTTCTCCCTATTCATTGGCCCCTATGCTTCCATTTTGGCAGTGGAATGCGTAGTGATTGGCTGATCACTCCCCTCCCCCACATCTTATTGGGAAAAATAACAATTAGTTTAGAGGTCTACAGCTGCAATTGGCTAGAATATCTGCATTCAATTCTGTCTGAAGCTATACAACATTTATATCCCTTCAATGACCTACAACTCATTCACAATTACATTTCCTGATCTTGAAGGGGGAAGTTaactggggggaaaaaaaacattcagtTTACAGTAACTTGTGACATTGGCCCTTTTTTGGAAAATGACTCCAgataaaaacaaaaatacaaatgtcATGCAACTAAACAAAACACTTCTCCCTTTTAAGAAATAAACATGTCACCCCCCCCAGCCCTTACTTGTAAATTAACACAAAATACTTGACAAAAGGTAGCACAGTTGTGGACCCTCTGGGCATTGGCACAGTAGAAAAGCAGTGCTTGTGTAAGGATGTTCCAGCAGAAGGTGAGTGGTTAGAGGGGGACAAGAGTTTGAGGCGATATGTTGGTAGGGCAAGTGGTTGATGGGGATAACAGAGGGAGAGTTTATGATCAAAATGGTGGTCCCATTCCAAAAGGGAGAAATAATTAGGTAAGAGTTATTACCCTCGCCACCTTCATATGTGTCCCAGTGGACACCAAATATCCCCGTAACAAGGGTtatcagaaagagagaaaagccTCGATGTATTTAAAACGCTTACGGCtaaaacagctagcagccaaagAAAGATCATAGGAATGGCCTCAAAACACACCTAAGCTGGAATGTGAATATTAGAAACCTGTGAGACACTTAAGATGTGGGTGCTTGAGTAAATGTTGCCCTTTTAAGACTAAAAGAAAGCTATGAAGAGGCTATAAAAaaaataagggggggggggtgctcatcCAGAGAGCATCCGCAGATACTGGGGTGGAATGTGGGAGGGGCGGTCAGCCATTTTGGTCTACTGGGGAGAAACATTTGGCTAGGTGTGGACTGAAGAAAGTGCTACCTTCACCAAAAACAATGAACATCCCCCCCCACGCTAAACAGTCAGccagcacagacagagagacagggccaGAGGTGAGGGGGTGGAGCAGTAAGAGGTGGTGGAGGGGCCAGTAGCCACTCAGAAGCTGTTGAGGTCCTCCAGGGTCTTGTCCAGGGTGGCGTGGATGTTGACATTCTCCTCCTTGGCGTTGGCTAGCGCATCTGTAAATCACACAAAGAAAGAACGAATGTAAGATAAGGGTCCTCCTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268801 lncRNA downstream 77488 21805530 ~ 21805751 (-) True G235165
TU268779 lncRNA downstream 93859 21788047 ~ 21789380 (-) True G235145
TU268681 lncRNA downstream 250450 21632282 ~ 21632789 (-) True G235052
TU268651 lncRNA downstream 292413 21588714 ~ 21590826 (-) True LOC110513449
TU268652 lncRNA downstream 293605 21587450 ~ 21589634 (-) False LOC110513449
TU268871 lncRNA upstream 23868 21943104 ~ 21943891 (-) True G235229
TU268877 lncRNA upstream 32541 21951777 ~ 21952115 (-) True G235235
TU268878 lncRNA upstream 32998 21952234 ~ 21952452 (-) True G235236
TU268916 lncRNA upstream 87669 22006905 ~ 22007104 (-) True G235274
TU268918 lncRNA upstream 90482 22009718 ~ 22010013 (-) True G235276
XM_021593341.2 mRNA downstream 122420 21756657 ~ 21760819 (-) False LOC110513558
XM_021593354.2 mRNA downstream 122420 21756657 ~ 21760819 (-) False LOC110513558
XM_036971925.1 mRNA downstream 122420 21756657 ~ 21760819 (-) True LOC110513558
XM_021593347.2 mRNA downstream 122590 21756657 ~ 21760649 (-) False LOC110513558
XM_036971926.1 mRNA downstream 127529 21744425 ~ 21755710 (-) False LOC118946878
LOC110503903 mRNA upstream 17946 21937182 ~ 21949846 (-) True LOC110503903
XM_036964179.1 mRNA upstream 120242 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 124153 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA upstream 124153 22043389 ~ 22050828 (-) False LOC110513791
XM_036972066.1 mRNA upstream 124153 22043389 ~ 22050828 (-) False LOC110513791
TU268720 other downstream 127738 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 139828 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 384407 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 413294 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 427523 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 654597 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1237873 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1852288 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2261320 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2261320 24180556 ~ 24183964 (-) True G237657

Expression Profile