RNA id: TU268416



Basic Information


Item Value
RNA id TU268416
length 1174
lncRNA type antisense_over
GC content 0.41
exon number 5
gene id G234823
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21902492 ~ 21906182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGAATTGAGTTTTATTACATCTTACACAGTGTTTCTGGTGCCCAGCATGGTGGGGCATGGCATTGTTAACAGTGCAAAAAAAGGTCCATGTAGCACATCAGAGACTGGCACCATCGTTATACACAGGGCAGGTCAGGGGTCACGAGGGGTTAGGCTACACAACTCCGAGATATGTGCTTGTCCATTCAGTAGTACCTCCACACAAGGCTAGCCTTCAGTAACTAACATGCACTGCAAAACGATATATAGCTTAAAATTGTCTCACATCACAGAACTGTTCTTCCGCTATATATTATATTTAGTTTCCATGCACAACATTACAGAAACATTTTAGTAACATATTGCTTAGGCTAATGGAGGGATATAATTCTAATAGTATAAGTTATTGTTACTAGTAGTTTGACTACTTGGTGTAGAGATATTAATTAACAATACGGTAAACATTGTTGTCATTGGTCAGTAGGGGACACACCCTCTCTTTCAGCCAATGAGAGGCTACAGTCCTGGAGTATGTAGTATAGAGAGGACAAAGTACAGGGACTTTCAATGGTGGTATCAATCTCATTGTTACAAAAATCTGTACATTTACAAAGAGTATAGAAACAAAAGATTTGAAAAGTATGTGACACCCTATGTCTCTGATAATGTGCCCtagctacacacacactgtcactggcAAATTGACAGATttattgaaagaaaagcaaaaactgaaacaaaaaaaacacccTACATCCTTGGAGTTTCAAGCGACAGTATCTTTACACAATTCATGAGTGAGGGGAAGGGCGGCGGGTTAGAAGGGGATGGAGGGGGTGTGGTTAGGTGGAAAGAGGAGTGGTTTATAAGGGGGCAGGGGCTGAAATGTCCTCAGCACAGAGCACAAGAGCTAGCTCTGTCCTGTATAGCTTGCCCCCGTCTGATAGCGCCATAATGGCGGTCTTATATGTGGGGATTTTGTTGACTTCCAGCACCTTCTTGTTCTTCTCACACAAATCTTTGAGGAGGGCATCCAGCTCATTCTCATCCATATAACCATTCTCatcCTGATCGTATAACTCAAAGATCTTGTTGAACTCTCTCCTCACCATCTTCACATTCTGAAACTTGAGTAGAAAGTTCTCCTCGTCCGGTAGCAGcCTCGCCATTTCTGCCAAACACAACTTCCCATCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268414 lncRNA upstream 1653 21900282 ~ 21900839 (+) True G234822
TU268408 lncRNA upstream 19507 21881051 ~ 21882985 (+) True G234817
TU268404 lncRNA upstream 34191 21867784 ~ 21868301 (+) True G234813
TU268403 lncRNA upstream 35382 21865793 ~ 21867110 (+) True G234812
TU268390 lncRNA upstream 98376 21803883 ~ 21804116 (+) True G234799
TU268427 lncRNA downstream 21717 21927899 ~ 21928166 (+) True G234834
TU268436 lncRNA downstream 34881 21941063 ~ 21941718 (+) True G234843
TU268437 lncRNA downstream 35705 21941887 ~ 21942100 (+) True G234844
TU268440 lncRNA downstream 37964 21944146 ~ 21944393 (+) True G234847
TU268448 lncRNA downstream 46389 21952571 ~ 21953313 (+) True G234855
LOC110513748 mRNA upstream 8501 21889013 ~ 21893991 (+) True LOC110513748
XM_021593447.2 mRNA upstream 17724 21863444 ~ 21884768 (+) False LOC110513633
XM_021593442.2 mRNA upstream 17724 21863446 ~ 21884768 (+) True LOC110513633
XM_021593457.2 mRNA upstream 27867 21863444 ~ 21874625 (+) False LOC110513633
XR_005039841.1 mRNA downstream 104748 22010930 ~ 22012458 (+) False LOC118944503
XM_021593480.2 mRNA downstream 111397 22017579 ~ 22037490 (+) False kiaa0319
XM_021593489.2 mRNA downstream 111397 22017579 ~ 22037490 (+) False kiaa0319
XM_021593485.2 mRNA downstream 111816 22017998 ~ 22037490 (+) False kiaa0319
XM_036972102.1 mRNA downstream 145353 22051535 ~ 22057256 (+) True LOC118947026
TU267870 other upstream 615490 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 637986 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 1293767 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1336780 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 2057840 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 111412 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 152360 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 152497 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 398311 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 554358 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile