RNA id: TU268871


Basic Information

Item Value
RNA id TU268871
length 512
lncRNA type intronic
GC content 0.45
exon number 3
gene id G235229
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21943104 ~ 21943891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTATCTTACACCACAAGGTTACAGCCTCACCATTGGACATACAGAAGTATCTTACACCGCAAGGTTACAGCCTCACCATTGGACATACAGAAGTATCTTACACCGCAAGGTTACAGCCTCACCATTGGACATACAGAAGTATCTTACACCGCAAGAGGCTTTGGTGACAGTTTATAGGGAGACAGAAAGAACAACAGACCAAATGATGCCCTCTAGATCAATGTCTTATCACCTATGGGCTGTTTCTCTATTCTGACATCCACAATATTGTTTTCACCTGTCAATTCTGTTCAGATCAGAGTAGATGTAGGTGAGGACCCAAAGGAGAGGAAATAACTTTACACTCTTGAGATGCAGCCCATAAGTGAGCACTGTCACagttagggttgcaaagggacgAATATTATTGGAAACTTTAGAAGTTTACCAttaaactaccagaattttggtaTCTTTTAATGATTTTATGCAATCTGTCACAAGAAATCTAGTGGCACTTTTGGGTATTTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268793 lncRNA downstream 23868 21883239 ~ 21919236 (-) True G235157
TU268790 lncRNA downstream 51158 21884786 ~ 21891946 (-) True pmvk
TU268842 lncRNA downstream 53664 21888091 ~ 21889440 (-) True G235200
TU268801 lncRNA downstream 137353 21805530 ~ 21805751 (-) True G235165
TU268779 lncRNA downstream 153724 21788047 ~ 21789380 (-) True G235145
TU268877 lncRNA upstream 7886 21951777 ~ 21952115 (-) True G235235
TU268878 lncRNA upstream 8343 21952234 ~ 21952452 (-) True G235236
TU268916 lncRNA upstream 63014 22006905 ~ 22007104 (-) True G235274
TU268918 lncRNA upstream 65827 22009718 ~ 22010013 (-) True G235276
TU268920 lncRNA upstream 69046 22012937 ~ 22013170 (-) True G235278
XM_021593474.2 mRNA downstream 16790 21902473 ~ 21926314 (-) True LOC110513756
XM_021593461.2 mRNA downstream 55832 21884781 ~ 21887272 (-) False pmvk
XM_021593341.2 mRNA downstream 182285 21756657 ~ 21760819 (-) False LOC110513558
XM_021593354.2 mRNA downstream 182285 21756657 ~ 21760819 (-) False LOC110513558
XM_036971925.1 mRNA downstream 182285 21756657 ~ 21760819 (-) True LOC110513558
XM_036964179.1 mRNA upstream 95587 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 99498 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA upstream 99498 22043389 ~ 22050828 (-) False LOC110513791
XM_036972066.1 mRNA upstream 99498 22043389 ~ 22050828 (-) False LOC110513791
XM_021593512.2 mRNA upstream 99498 22043389 ~ 22051257 (-) False LOC110513791
TU268720 other downstream 187603 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 199693 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 444272 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 473159 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 487388 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 629942 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1213218 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1827633 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2236665 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2236665 24180556 ~ 24183964 (-) True G237657

Expression Profile