RNA id: TCONS_00029246


Basic Information

Item Value
RNA id TCONS_00029246
length 1766
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_014819
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 26739813 ~ 26770083 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attattttatttttcctttttcatttgttttgtggaaaaaaagaaaaaggagtaCAAGTAAGCTTCACTGCACACATCCGTCCTCAGCAATCCCCATCAGATCTCTTCAACACATAATCCTGTTTTGAGCTTTTGTAAGAGATTGTGCTAACGGTAGCTAGTACACGATTATTGCTAATAACTCCACGATACAACCTCGAGACAAGTCGGGACAAGACCAGtctCAGGACTCACCATACTCAATGAGCGTACAGCGCAATGTCAGAGCGCTCTGGGCAAACGGCAAAGGGGAAGGATGGCAAAACCAAGTATGCGTCTCTCAACCTGTTTGATACCTACAAAGGAAAGAGCCTTGAAGCACAGAAGCCAGTTGTTGCCCCTCGTCATGGCTTACAGTCTCTTGGTAAAGTTGCCTCTACACGGCGCATGCCCCCCCCTGCCAACTTGCCTAGTTTGAAGGCAGAGAACAAAGGCGCCATGGCCGATCCCAGCATCAGCAGGACAAGCCTCCAAGATTCCGCAGACTTAAACAAGAGCGAGAGAATGCAGCCCGTATAAATGGAAGCAGTGGATTAATTGAAGTCATAGCTGCACAACAGCAACGCACTGCTCCACTGTTGCAAAATTCCCTGCAACAAGCCAACAGCACTCCCAATGTACCCGATGCAGTAGTTGCAAATGCAAATCACAGTGTGTCCACAACTcctaacagtaataataatagcagcaaCCTTGCAGGTGGAAACCAAAATTTCAATAGTCACCACCACCATCACTATCAGGGTAACTCCCAGTCACACCCTCAGCACCATCACAACCATAACCCGGCCGGGGGCGCCAAATCTCCAGATGTCTCCAACCAGAACTCTGACCAGGCAAATGAAGAATGGGAAACTGCCTCAGAAAGCAGTGATTTCACAGAGTTTCGAGAGAGAGAGGGTGGAGGAGGTGGTAAATCCTATTCCTCgcatcaccatcatcaccaccaccaccaccatccacCGGGAAGAGGCGGTGGAGGGGGCGGTGGTGGCGACAGAGAGATGACTGCTAAAGAATTAGCCTCTGGGAAGAGGAGCTTCTCCAGTCAGCGTCCAGGAATGGAGCGGCAGAACAGAAGGGTgaatgctggtggtggtggtggaggaAAAGGCCAGAGGGGTCCGCCCGGCACTGGTGGGCCAGTGGGTGGAGCTGGCAATGGCGGGGGTAATCGTGGTGAGAGGCGTGGCAACTGGCCTTCTCCCAAGAACAGgaagtgatttctttttttttttggaaatgtttCAAACGCATCCCTCTATCTTTGGCCACTTTTGTTTTCTGTAAAACTTCTTCCCCCTTAACATGTTAACACATTATTATTGTGAAAGAATAGTTACCAAGACCATGTACACAGTCTAGCTCTTTTGGTTGATAGCTTTTTGTCCCTTAATTGGAAATTTACACTCGTGTCATTTCACGCTCCCACAATTCCTAAACTCTATTGAGATTTTACACAACACAGCCCTTTTTAATGGAAGTATTTCCTGACTGAACATGCATTCAACCCAATTATGtttgcatacacaaacacagtaAGACATCAACCTGACGAAAATGTGCTTAGTTTGTGTATGCCGGGCACGATATGTGTATTTCTTGTATGAAGTCTGGCTTAGTATAAGGCCAAGGTTGGTGTACTTGTGTATTATTCACATTACATGTTGGATTTTGGAAGTTGCTCTTTTAATAAGAACATATGTatcataaaataatttttccCC

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-010501-4 Predicted to be involved in cell differentiation. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to human PRRC2A (proline rich coiled-coil 2A).

Ensembl:

ensembl_id ENSDART00000159489

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029239 lncRNA downstream 6052 26730298 ~ 26736346 (-) False XLOC_014818
TCONS_00029241 lncRNA downstream 6055 26732122 ~ 26736343 (-) True XLOC_014818
TCONS_00029226 lncRNA downstream 1585207 25155542 ~ 25157191 (-) True XLOC_014808
TCONS_00029224 lncRNA downstream 1627731 25112796 ~ 25114667 (-) False XLOC_014807
TCONS_00029217 lncRNA downstream 1656306 25084265 ~ 25086092 (-) False XLOC_014806
TCONS_00029778 lncRNA upstream 9679 26779546 ~ 26780698 (-) True XLOC_014820
TCONS_00029779 lncRNA upstream 17033 26786900 ~ 26788280 (-) True XLOC_014821
TCONS_00030237 lncRNA upstream 34002 26803869 ~ 26807219 (-) True XLOC_014822
TCONS_00029248 lncRNA upstream 51799 26821666 ~ 26823709 (-) True XLOC_014823
TCONS_00029254 lncRNA upstream 143557 26913424 ~ 26917550 (-) True XLOC_014826
TCONS_00029238 mRNA downstream 6062 26730298 ~ 26736336 (-) False XLOC_014818
TCONS_00029240 mRNA downstream 6062 26730976 ~ 26736336 (-) False XLOC_014818
TCONS_00029237 mRNA downstream 507179 26161709 ~ 26235219 (-) True XLOC_014817
TCONS_00029236 mRNA downstream 969418 25699329 ~ 25772980 (-) True XLOC_014816
TCONS_00029235 mRNA downstream 1048670 25679538 ~ 25693728 (-) True XLOC_014815
TCONS_00029247 mRNA upstream 40341 26810208 ~ 26823647 (-) False XLOC_014823
TCONS_00029250 mRNA upstream 88172 26858039 ~ 26863626 (-) False XLOC_014825
TCONS_00029251 mRNA upstream 88172 26858039 ~ 26869103 (-) True XLOC_014825
TCONS_00029252 mRNA upstream 99561 26869428 ~ 26923957 (-) False XLOC_014826
TCONS_00029253 mRNA upstream 102818 26872685 ~ 26923273 (-) False XLOC_014826
TCONS_00029233 other downstream 1223858 25518420 ~ 25518540 (-) True XLOC_014813
TCONS_00029225 other downstream 1593414 25146786 ~ 25148984 (-) True XLOC_014807
TCONS_00029214 other downstream 1681521 25056812 ~ 25060877 (-) True XLOC_014804
TCONS_00029210 other downstream 1985074 24757193 ~ 24757324 (-) True XLOC_014799
TCONS_00029209 other downstream 1985424 24756843 ~ 24756974 (-) True XLOC_014800
TCONS_00029249 other upstream 58314 26828181 ~ 26837124 (-) True XLOC_014824
TCONS_00029261 other upstream 402847 27172714 ~ 27172830 (-) True XLOC_014831
TCONS_00029268 other upstream 564663 27334530 ~ 27336629 (-) False XLOC_014832
TCONS_00029282 other upstream 694549 27464416 ~ 27464482 (-) False XLOC_014836
TCONS_00029285 other upstream 695237 27465104 ~ 27465170 (-) False XLOC_014836

Expression Profile

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