RNA id: TU268878


Basic Information

Item Value
RNA id TU268878
length 219
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G235236
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21952234 ~ 21952452 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtctacacacaataccccaaaatgtcaATGTGGAAtagtgtttttagacatttttacaaatccataaaaaatgaaaagctgaaatgtcttgagtcaataagtattcaaccgctatgttatggcaagcctaaatatgttcaggagtaaacatttgcttagcAAGTCacaaataagttgcatggactcactctgtgtgcaataatagtgtttaatatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268877 lncRNA downstream 119 21951777 ~ 21952115 (-) True G235235
TU268871 lncRNA downstream 8343 21943104 ~ 21943891 (-) True G235229
TU268793 lncRNA downstream 32998 21883239 ~ 21919236 (-) True G235157
TU268790 lncRNA downstream 60288 21884786 ~ 21891946 (-) True pmvk
TU268842 lncRNA downstream 62794 21888091 ~ 21889440 (-) True G235200
TU268916 lncRNA upstream 54453 22006905 ~ 22007104 (-) True G235274
TU268918 lncRNA upstream 57266 22009718 ~ 22010013 (-) True G235276
TU268920 lncRNA upstream 60485 22012937 ~ 22013170 (-) True G235278
TU268921 lncRNA upstream 60805 22013257 ~ 22013564 (-) True G235279
TU268925 lncRNA upstream 64467 22016919 ~ 22017314 (-) True G235283
LOC110503903 mRNA downstream 2388 21937182 ~ 21949846 (-) True LOC110503903
XM_021593474.2 mRNA downstream 25920 21902473 ~ 21926314 (-) True LOC110513756
XM_021593461.2 mRNA downstream 64962 21884781 ~ 21887272 (-) False pmvk
XM_021593354.2 mRNA downstream 191415 21756657 ~ 21760819 (-) False LOC110513558
XM_036964179.1 mRNA upstream 87026 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 90937 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA upstream 90937 22043389 ~ 22050828 (-) False LOC110513791
XM_036972066.1 mRNA upstream 90937 22043389 ~ 22050828 (-) False LOC110513791
XM_021593512.2 mRNA upstream 90937 22043389 ~ 22051257 (-) False LOC110513791
TU268720 other downstream 196733 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 208823 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 453402 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 482289 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 496518 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 621381 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1204657 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1819072 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2228104 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2228104 24180556 ~ 24183964 (-) True G237657

Expression Profile