RNA id: TU268448



Basic Information


Item Value
RNA id TU268448
length 743
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G234855
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21952571 ~ 21953313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGTTAAAAAATATTATCTTTTGACATGGGACATAACATCTAAATAAGAGAACGTACCTATTACATTTCACACAAACGTTATGGATGCTGAAATTTATATCAAATTAGAAATTCAAATTCAACTTAGCCTCTTGTATTCACTGAGCGCACATCATGTGACCTGACTTGTAAGTTGTTCTGATATAGGCTTCCTCTGAATGTATGAACAAAACAGTGTATTTATTGAAAAGCAAGGAtgaattgtcatgtattgtcatgttgtgtcttgtttctgtcctttcccttcaccctgtctccctctgctggtcgttattaggttaccttttctccccctctttcccccagctgttccttgtctcctcctaactacctcgtcaccccttttcccacctgttcccttttttccctctgattagtcctctatatctctctctgtttttgttcctgtctttgtcggattcttgtttgtgtttttcatgcctgaaccagactatcgtcatgtttgctgcaaccttgtcctgtcctgtcggaatctgccggtccatctgagcctacctatgttttgttattaaagaagttctgtttacgttaattcgcttttgggtcctcattcacgcaccgtaacatgaaTACTATAATACCCTGCTAACCTGCAGTCTATGACTCTCTGTGCCTGTTTATTCCTCTCAGATTCACATAAAGCCTTTGTAACTGCTAGTGTGTTTGTTTGAAACAAACATGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268440 lncRNA upstream 8178 21944146 ~ 21944393 (+) True G234847
TU268437 lncRNA upstream 10471 21941887 ~ 21942100 (+) True G234844
TU268436 lncRNA upstream 10853 21941063 ~ 21941718 (+) True G234843
TU268427 lncRNA upstream 24405 21927899 ~ 21928166 (+) True G234834
TU268416 lncRNA upstream 46389 21902492 ~ 21906182 (+) True G234823
TU268502 lncRNA downstream 57585 22010898 ~ 22011265 (+) False LOC118944503
TU268505 lncRNA downstream 57993 22011306 ~ 22012064 (+) True LOC118944503
TU268504 lncRNA downstream 59342 22012655 ~ 22012897 (+) True G234902
TU268506 lncRNA downstream 61803 22015116 ~ 22015435 (+) True G234904
TU268550 lncRNA downstream 105366 22058679 ~ 22067477 (+) True LOC110503910
LOC110513748 mRNA upstream 58580 21889013 ~ 21893991 (+) True LOC110513748
XM_021593447.2 mRNA upstream 67803 21863444 ~ 21884768 (+) False LOC110513633
XM_021593442.2 mRNA upstream 67803 21863446 ~ 21884768 (+) True LOC110513633
XM_021593457.2 mRNA upstream 77946 21863444 ~ 21874625 (+) False LOC110513633
XR_005039841.1 mRNA downstream 57617 22010930 ~ 22012458 (+) False LOC118944503
XM_021593480.2 mRNA downstream 64266 22017579 ~ 22037490 (+) False kiaa0319
XM_021593489.2 mRNA downstream 64266 22017579 ~ 22037490 (+) False kiaa0319
XM_021593485.2 mRNA downstream 64685 22017998 ~ 22037490 (+) False kiaa0319
XM_036972102.1 mRNA downstream 98222 22051535 ~ 22057256 (+) True LOC118947026
TU267870 other upstream 665569 21286726 ~ 21287002 (+) True G234340
TU267841 other upstream 688065 21264075 ~ 21264506 (+) True G234322
TU266973 other upstream 1343846 20608293 ~ 20608725 (+) True G233545
TU266948 other upstream 1386859 20558776 ~ 20565712 (+) True G233521
TU265650 other upstream 2107919 19827130 ~ 19844652 (+) True LOC110512505
TU268500 other downstream 64281 22017594 ~ 22019984 (+) True kiaa0319
TU268551 other downstream 105229 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other downstream 105366 22058679 ~ 22068080 (+) False LOC110503910
TU269077 other downstream 351180 22304493 ~ 22304906 (+) True G235426
TU269168 other downstream 507227 22460540 ~ 22472917 (+) False LOC110514034

Expression Profile