RNA id: TU268916


Basic Information

Item Value
RNA id TU268916
length 200
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G235274
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22006905 ~ 22007104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTTATATGACTGTGTTTATGGTTATCCTTCCTATGCTATGTTGATATGGTCCATCCCAGGTAGTGACAGAAGCTATTTCACTGCCATACTGCTGAGGAAGTCCAGAGTTCAACTTCTGGAGAGTAGCATAGTGAATTACCCTACCACAGAGATGAGGAGAAACCTGCTTATGGCCCAATAAAGAACACTCTCTGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268878 lncRNA downstream 54453 21952234 ~ 21952452 (-) True G235236
TU268877 lncRNA downstream 54790 21951777 ~ 21952115 (-) True G235235
TU268871 lncRNA downstream 63014 21943104 ~ 21943891 (-) True G235229
TU268793 lncRNA downstream 87669 21883239 ~ 21919236 (-) True G235157
TU268918 lncRNA upstream 2614 22009718 ~ 22010013 (-) True G235276
TU268920 lncRNA upstream 5833 22012937 ~ 22013170 (-) True G235278
TU268921 lncRNA upstream 6153 22013257 ~ 22013564 (-) True G235279
TU268925 lncRNA upstream 9815 22016919 ~ 22017314 (-) True G235283
TU268955 lncRNA upstream 85210 22092314 ~ 22095038 (-) True G235312
LOC110503903 mRNA downstream 57059 21937182 ~ 21949846 (-) True LOC110503903
XM_021593474.2 mRNA downstream 80591 21902473 ~ 21926314 (-) True LOC110513756
XM_021593461.2 mRNA downstream 119633 21884781 ~ 21887272 (-) False pmvk
XM_021593354.2 mRNA downstream 246086 21756657 ~ 21760819 (-) False LOC110513558
XM_036964179.1 mRNA upstream 32374 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 36285 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA upstream 36285 22043389 ~ 22050828 (-) False LOC110513791
XM_036972066.1 mRNA upstream 36285 22043389 ~ 22050828 (-) False LOC110513791
XM_021593512.2 mRNA upstream 36285 22043389 ~ 22051257 (-) False LOC110513791
TU268720 other downstream 251404 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 263494 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 508073 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 536960 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 551189 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 566729 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1150005 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1764420 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2173452 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2173452 24180556 ~ 24183964 (-) True G237657

Expression Profile