RNA id: TU268925


Basic Information

Item Value
RNA id TU268925
length 396
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G235283
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22016919 ~ 22017314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcttggcacattctctcaaccagcttcacctggaatgattttccaacagtcttgaaggagttcccacatatgctgagcacttgttggctgcttttccttcactcttcggtccaactcaccccaaaccatcgCAATTGGtttaaggtcgggtgattgtggaggccaggtcatcagatgcagcactccatcactctctttcttggtcaaatagcccttacacagcctggaggtgtgtttttggtcattgtcctgttgaaaaacaaattattgtcACACTAAGCCCAAACAAGataggatggcatatcgctgctgaatgctgtggtggccatgctggttgtTTTTGCCTTGAATCctaaatacatcacagacagttagacagtgtccccagcaaagca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268921 lncRNA downstream 3355 22013257 ~ 22013564 (-) True G235279
TU268920 lncRNA downstream 3749 22012937 ~ 22013170 (-) True G235278
TU268918 lncRNA downstream 6906 22009718 ~ 22010013 (-) True G235276
TU268916 lncRNA downstream 9815 22006905 ~ 22007104 (-) True G235274
TU268878 lncRNA downstream 64467 21952234 ~ 21952452 (-) True G235236
TU268955 lncRNA upstream 75000 22092314 ~ 22095038 (-) True G235312
TU269458 lncRNA upstream 223710 22241024 ~ 22241932 (-) True G235750
TU269502 lncRNA upstream 266566 22283880 ~ 22284776 (-) True G235785
TU269516 lncRNA upstream 301612 22318926 ~ 22319165 (-) True G235793
TU269517 lncRNA upstream 302041 22319355 ~ 22319576 (-) True G235794
LOC110503903 mRNA downstream 67073 21937182 ~ 21949846 (-) True LOC110503903
XM_021593474.2 mRNA downstream 90605 21902473 ~ 21926314 (-) True LOC110513756
XM_021593461.2 mRNA downstream 129647 21884781 ~ 21887272 (-) False pmvk
XM_021593354.2 mRNA downstream 256100 21756657 ~ 21760819 (-) False LOC110513558
XM_036964179.1 mRNA upstream 22164 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 26075 22043389 ~ 22050828 (-) False LOC110513791
XM_036972056.1 mRNA upstream 26075 22043389 ~ 22050828 (-) False LOC110513791
XM_036972066.1 mRNA upstream 26075 22043389 ~ 22050828 (-) False LOC110513791
XM_021593512.2 mRNA upstream 26075 22043389 ~ 22051257 (-) False LOC110513791
TU268720 other downstream 261418 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 273508 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 518087 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 546974 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 561203 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 556519 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1139795 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1754210 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2163242 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2163242 24180556 ~ 24183964 (-) True G237657

Expression Profile