RNA id: TU269458



Basic Information


Item Value
RNA id TU269458
length 438
lncRNA type antisense_over
GC content 0.31
exon number 2
gene id G235750
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22241024 ~ 22241932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagacagacagacagagagagagacagacagagagagagacagaaagagagacagacagagagacagacggagagtgtaTGAATGGGGGAGGAAGAGCAGCCAATCAGCACAGAGGcgtaggataggagaggagaaatgaggggagaaaaggggggttagagagggagaaacagataGAGGGACAACATACACAGCTTGAGAGAAGATGGGAGCCTCGTCGTTGGTGTTGGCCATTCTGAACCGGATGGAGGCGGTCCCGGTGCGGGGTGGAGTCCCGTTGTCCACGACCACCACCACAAACTCATACATGTGATTGGGCCGCTCGTAGTCCAACCGTTGGCTGGGGCTGACCACGCCCCTGGAAGAGATGGCAAAGTCGGCACTCTGGATGAAGTAGGAGAGCTCTGAGTTGAGCCCCGTGTCACAGTCCCTCGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU268955 lncRNA downstream 145986 22092314 ~ 22095038 (-) True G235312
TU268925 lncRNA downstream 223710 22016919 ~ 22017314 (-) True G235283
TU268921 lncRNA downstream 227460 22013257 ~ 22013564 (-) True G235279
TU268920 lncRNA downstream 227854 22012937 ~ 22013170 (-) True G235278
TU268918 lncRNA downstream 231011 22009718 ~ 22010013 (-) True G235276
TU269502 lncRNA upstream 41948 22283880 ~ 22284776 (-) True G235785
TU269516 lncRNA upstream 76994 22318926 ~ 22319165 (-) True G235793
TU269517 lncRNA upstream 77423 22319355 ~ 22319576 (-) True G235794
TU269495 lncRNA upstream 80233 22322165 ~ 22323438 (-) True G235779
TU269448 lncRNA upstream 102232 22344164 ~ 22347983 (-) True G235740
XM_021593527.2 mRNA downstream 149696 22089856 ~ 22091328 (-) True LOC110513818
XM_021593499.2 mRNA downstream 189550 22043389 ~ 22051474 (-) True LOC110513791
XM_021593504.2 mRNA downstream 189736 22043389 ~ 22051288 (-) False LOC110513791
XM_021593512.2 mRNA downstream 189767 22043389 ~ 22051257 (-) False LOC110513791
XM_036972066.1 mRNA downstream 190196 22043389 ~ 22050828 (-) False LOC110513791
XM_021593534.2 mRNA upstream 52935 22294867 ~ 22302014 (-) True LOC110513832
XM_021593542.2 mRNA upstream 64007 22305939 ~ 22317525 (-) False LOC110513844
XM_021593544.2 mRNA upstream 64007 22305939 ~ 22317525 (-) False LOC110513844
XM_021593541.2 mRNA upstream 64007 22305939 ~ 22317533 (-) True LOC110513844
XM_021593560.2 mRNA upstream 82790 22324722 ~ 22336054 (-) False LOC110513910
TU268720 other downstream 485523 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 497613 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 742192 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 771079 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 785308 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 331901 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 915177 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1529592 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 1938624 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 1938624 24180556 ~ 24183964 (-) True G237657

Expression Profile