RNA id: TU269091


Basic Information

Item Value
RNA id TU269091
length 1412
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G235433
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 22323590 ~ 22325001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCCTACCTCACCAAGCCGCCACACAATTCTcatatggaaaataaataaaggcCATAAAGAATTTCCTTGTCTCTGAGAGGACTCAACTGAAAAATAACAAGAATGAGCTTTCTGTTAAAGAATTGAGATTGGGGTCAAGGAGCGGTCAACAAACTTACTGTCAGAaagtaaaaaaaagtaaaaataattaAACTGTCAAACTAGTTTGGGTACATGCTTATTTCTGCATTCAAAACCCCTACTGCTGCTGCCTAAGACAATTTTGCTGAACCAGAAGCACACTTGGCACCCAGACATAATTTAAACAGGATTTCAACAGTTTATCTGAACGGTTACAAAAATAGGTGCTTCACAGGGCTGGTGGAAACATGACTTCAGACAGAAAAAAATAGTTTGGAAATCTTAAAAACAATCCCAGTGAACCCCGGTGCATTCACATTGAATCATTTGATCAAGTGGACTCCATAAATACAAGGTTCAGTGGGTTGGAGCGTTGGGGATTTCCTGGCTAGGGTTCAAAGTTCTTAACTTGTTTGTTCTCATGGCAACAGGTGGATAAATCCATCCCATGTTTGTGGAACAGGATTGCAAACATCAGGGTGGCCAACAATAAAAGGACCAGAATCCTCTTCTCTGTTTATGTCCCCTTAAAATACCTATTCTTATAGGGACACATACATCCTAGTTGGTAAACAAATGGTCTACTGTTGATATTAGGCACAATCAAATATGTTGGCATATTGTTTCTTTTTTGTCACTTAGAAAAATCTATAGTGGAGGACAATAAAAGAAATTTAGTATAAAAAAGCACAAAGGGTGAAAGAAGTTATTTTCTTCCTCCTTTTACTTTATGCTTTTCTTTTCAGGCTGTTTTCTCTTTCTTTACATCCACTCTGGATAACGAGATGGTGAGTGATGAGCCGGAGGGAAAATACAAATAGCCCTCTTTCAAATAGGGATAGAGTGTGAAACATCCGAGGGCCTTGtcagccctccctccctgaccTCTTTATGCCCTTCTCTATCCCTggctccatctcttcctctcctttattGATTGCAACACATTCTCTATCTAAACCTTTCTCCCCTCTTTACAGTATGTTAGAGAGAGCTTCTCCAGACAGTCCTAACAGGGTAGGCTCACTCCCACCCATCCCCCATCACCCTCCCTCAGCGCGCACACGACCACAGTTCATCCTGGGAGTCAGTCCTCCATCCCGATTACTCCTCTGTTGGGCTGCGACCCTTTCCCTCTGACCCCTGAACCGCACACACCACCATTGATCTCTGTCGGAGAAACGTAGGAGTTGTCCACACGGCCGGGGTGGTGAGCCGCGGACCCCCGACACATCTTGATCAGGTGACCCACCAGGCTGGCCAACAGCAGAAAAGGTCCACAGGCCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269089 lncRNA upstream 170 22322164 ~ 22323420 (+) True G235432
TU269090 lncRNA upstream 1087 22322102 ~ 22322503 (+) False G235432
TU269086 lncRNA upstream 4367 22318922 ~ 22319223 (+) True G235429
TU269085 lncRNA upstream 4853 22318536 ~ 22318737 (+) True G235428
TU269080 lncRNA upstream 19375 22303641 ~ 22304215 (+) False G235426
TU269092 lncRNA downstream 185 22325186 ~ 22325511 (+) True G235434
TU269093 lncRNA downstream 1412 22326413 ~ 22326875 (+) True G235435
TU269096 lncRNA downstream 5661 22330662 ~ 22330890 (+) True G235438
TU269098 lncRNA downstream 6881 22331882 ~ 22332703 (+) True G235440
TU269100 lncRNA downstream 10686 22335687 ~ 22336032 (+) True G235442
XM_036972103.1 mRNA upstream 33400 22227628 ~ 22290190 (+) False LOC110503919
XM_036964683.1 mRNA upstream 98703 22156347 ~ 22224887 (+) True LOC118944657
XM_021582547.2 mRNA upstream 255722 22057484 ~ 22067868 (+) False LOC110503910
XM_036972102.1 mRNA upstream 266334 22051535 ~ 22057256 (+) True LOC118947026
XM_021593485.2 mRNA upstream 286100 22017998 ~ 22037490 (+) False kiaa0319
XM_021593552.2 mRNA downstream 16743 22341744 ~ 22357183 (+) False LOC110513878
XM_021593554.2 mRNA downstream 16785 22341786 ~ 22357183 (+) False LOC110513878
XM_021593551.2 mRNA downstream 16973 22341974 ~ 22357183 (+) False LOC110513878
XM_036972132.1 mRNA downstream 16973 22341974 ~ 22357183 (+) False LOC110513878
XM_036972133.1 mRNA downstream 16973 22341974 ~ 22357183 (+) False LOC110513878
TU269077 other upstream 18684 22304493 ~ 22304906 (+) True G235426
TU268551 other upstream 255510 22058542 ~ 22068080 (+) False LOC110503910
TU268548 other upstream 255510 22058679 ~ 22068080 (+) False LOC110503910
TU268500 other upstream 303606 22017594 ~ 22019984 (+) True kiaa0319
TU267870 other upstream 1036588 21286726 ~ 21287002 (+) True G234340
TU269168 other downstream 135539 22460540 ~ 22472917 (+) False LOC110514034
TU269171 other downstream 135539 22460540 ~ 22472917 (+) False LOC110514034
TU269172 other downstream 135539 22460540 ~ 22472917 (+) True LOC110514034
TU269263 other downstream 347735 22672736 ~ 22698834 (+) True G235571
TU269259 other downstream 348524 22673525 ~ 22680728 (+) False G235569

Expression Profile